Variant report

Variant	rs9906274
Chromosome Location	chr17:38281581-38281582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38252517..38259251-chr17:38276179..38282890,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126368	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10512482	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1104761	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11540720	0.92[EUR][1000 genomes]
rs12103533	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs15685	1.00[EUR][1000 genomes]
rs16965660	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16965669	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16965734	0.92[EUR][1000 genomes]
rs16965736	0.92[EUR][1000 genomes]
rs17616543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17616672	1.00[EUR][1000 genomes]
rs17616879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17617263	1.00[EUR][1000 genomes]
rs17678817	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17678959	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17678990	1.00[EUR][1000 genomes]
rs17679086	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17679361	1.00[EUR][1000 genomes]
rs17680217	1.00[EUR][1000 genomes]
rs2229773	1.00[EUR][1000 genomes]
rs28410661	0.83[AFR][1000 genomes]
rs28526298	0.92[EUR][1000 genomes]
rs28750099	0.87[AFR][1000 genomes]
rs33998939	1.00[EUR][1000 genomes]
rs34270904	0.92[EUR][1000 genomes]
rs34300454	0.92[EUR][1000 genomes]
rs35783632	1.00[EUR][1000 genomes]
rs35898909	1.00[EUR][1000 genomes]
rs41283417	0.92[EUR][1000 genomes]
rs41283423	1.00[EUR][1000 genomes]
rs4134993	1.00[EUR][1000 genomes]
rs4134998	1.00[EUR][1000 genomes]
rs4135005	1.00[EUR][1000 genomes]
rs4135007	1.00[EUR][1000 genomes]
rs4135012	1.00[EUR][1000 genomes]
rs4135019	1.00[EUR][1000 genomes]
rs4135021	1.00[EUR][1000 genomes]
rs4135027	1.00[EUR][1000 genomes]
rs4135030	1.00[EUR][1000 genomes]
rs45612441	1.00[EUR][1000 genomes]
rs7206995	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7214783	0.85[EUR][1000 genomes]
rs8067519	0.92[EUR][1000 genomes]
rs8071687	0.92[EUR][1000 genomes]
rs8077482	0.92[EUR][1000 genomes]
rs9889905	0.92[EUR][1000 genomes]
rs9891944	1.00[EUR][1000 genomes]
rs9894364	0.92[EUR][1000 genomes]
rs9894807	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9896339	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9898500	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9899425	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9900154	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9903293	0.92[EUR][1000 genomes]
rs9904120	0.95[AFR][1000 genomes]
rs9909548	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9909777	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9909811	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9910373	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9910546	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9911936	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs9915775	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908221	chr17:38216522-38289003	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv528369	chr17:38256693-38289003	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38276800-38281800	Active TSS	NHLF	lung
2	chr17:38277000-38281600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr17:38277000-38282000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr17:38277000-38282200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr17:38278000-38281600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:38279400-38281800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:38280000-38282200	Transcr. at gene 5' and 3'	Dnd41	blood
8	chr17:38280200-38281800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr17:38280400-38281600	Flanking Active TSS	HUVEC	blood vessel
10	chr17:38280600-38281800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:38280600-38282200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:38280800-38281600	Transcr. at gene 5' and 3'	A549	lung
13	chr17:38280800-38281800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr17:38280800-38281800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr17:38280800-38281800	Flanking Active TSS	Fetal Brain Female	brain
16	chr17:38280800-38282400	Weak transcription	Spleen	Spleen
17	chr17:38281000-38281600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr17:38281000-38281800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr17:38281000-38281800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr17:38281000-38281800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr17:38281000-38281800	Transcr. at gene 5' and 3'	HMEC	breast
22	chr17:38281000-38282400	Weak transcription	Gastric	stomach
23	chr17:38281000-38282400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr17:38281000-38283400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr17:38281000-38285600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr17:38281200-38281600	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr17:38281200-38281600	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr17:38281200-38281600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr17:38281200-38281600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:38281200-38281800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr17:38281200-38281800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:38281200-38281800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr17:38281200-38281800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr17:38281200-38281800	Enhancers	Brain Cingulate Gyrus	brain
35	chr17:38281200-38281800	Enhancers	Duodenum Mucosa	Duodenum
36	chr17:38281200-38281800	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr17:38281200-38281800	Enhancers	Fetal Intestine Large	intestine
38	chr17:38281200-38281800	Genic enhancers	Fetal Intestine Small	intestine
39	chr17:38281200-38281800	Genic enhancers	Fetal Stomach	stomach
40	chr17:38281200-38281800	Weak transcription	Lung	lung
41	chr17:38281200-38281800	Active TSS	HSMMtube	muscle
42	chr17:38281200-38281800	Active TSS	Osteobl	bone
43	chr17:38281200-38282000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr17:38281200-38282000	Enhancers	Adipose Nuclei	Adipose
45	chr17:38281200-38282000	Weak transcription	Placenta	Placenta
46	chr17:38281200-38282000	Weak transcription	Left Ventricle	heart
47	chr17:38281200-38282000	Weak transcription	Pancreas	Pancrea
48	chr17:38281200-38282000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr17:38281200-38282000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr17:38281200-38282200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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