Variant report

Variant	rs4135005
Chromosome Location	chr17:38448383-38448384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38447313..38449363-chr17:38472894..38474903,2	K562	blood:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10305288	1.00[AFR][1000 genomes]
rs10305296	1.00[AFR][1000 genomes]
rs10305303	1.00[AFR][1000 genomes]
rs10512482	0.92[EUR][1000 genomes]
rs1104761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11540720	0.92[EUR][1000 genomes]
rs12103533	0.92[EUR][1000 genomes]
rs15685	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16965660	0.92[EUR][1000 genomes]
rs16965669	0.92[EUR][1000 genomes]
rs16965734	0.92[EUR][1000 genomes]
rs16965736	0.92[EUR][1000 genomes]
rs16965748	0.92[EUR][1000 genomes]
rs16965774	0.92[EUR][1000 genomes]
rs16965778	0.92[EUR][1000 genomes]
rs17557495	1.00[AFR][1000 genomes]
rs17616365	1.00[AMR][1000 genomes]
rs17616543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17617263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17618397	1.00[AFR][1000 genomes]
rs17678817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17678959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17678990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679038	1.00[AFR][1000 genomes]
rs17679086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17680704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2012667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2229773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362320	0.92[EUR][1000 genomes]
rs28362321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526298	0.92[EUR][1000 genomes]
rs33998939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34270904	0.92[EUR][1000 genomes]
rs34300454	0.92[EUR][1000 genomes]
rs35783632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35898909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41283417	0.92[EUR][1000 genomes]
rs41283423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4134993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4134998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45612441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7214783	0.85[EUR][1000 genomes]
rs72819623	1.00[AFR][1000 genomes]
rs72819624	1.00[AFR][1000 genomes]
rs72819628	1.00[AFR][1000 genomes]
rs72819630	1.00[AFR][1000 genomes]
rs72819632	1.00[AFR][1000 genomes]
rs72819633	1.00[AFR][1000 genomes]
rs72819651	1.00[AFR][1000 genomes]
rs8067519	0.92[EUR][1000 genomes]
rs8071687	0.92[EUR][1000 genomes]
rs8077482	0.92[EUR][1000 genomes]
rs9889905	0.92[EUR][1000 genomes]
rs9891944	1.00[EUR][1000 genomes]
rs9894364	0.92[EUR][1000 genomes]
rs9894807	0.92[EUR][1000 genomes]
rs9898500	0.92[EUR][1000 genomes]
rs9899425	0.92[EUR][1000 genomes]
rs9900154	0.92[EUR][1000 genomes]
rs9903293	0.92[EUR][1000 genomes]
rs9906274	1.00[EUR][1000 genomes]
rs9909777	0.92[EUR][1000 genomes]
rs9909811	0.92[EUR][1000 genomes]
rs9910373	0.92[EUR][1000 genomes]
rs9915775	0.92[EUR][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38444600-38451600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr17:38444600-38454600	Weak transcription	Ovary	ovary
3	chr17:38444600-38459400	Weak transcription	Brain Angular Gyrus	brain
4	chr17:38444600-38459400	Weak transcription	Spleen	Spleen
5	chr17:38444600-38459600	Weak transcription	Brain Anterior Caudate	brain
6	chr17:38444600-38459600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:38444600-38459600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:38444800-38449400	Weak transcription	Adipose Nuclei	Adipose
9	chr17:38444800-38451800	Weak transcription	Fetal Brain Female	brain
10	chr17:38444800-38459200	Weak transcription	Fetal Intestine Large	intestine
11	chr17:38444800-38459400	Weak transcription	Fetal Kidney	kidney
12	chr17:38444800-38459400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr17:38444800-38459600	Weak transcription	Right Ventricle	heart
14	chr17:38444800-38459600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr17:38444800-38462600	Weak transcription	Esophagus	oesophagus
16	chr17:38445000-38452000	Weak transcription	Fetal Intestine Small	intestine
17	chr17:38445000-38459600	Weak transcription	Colonic Mucosa	Colon
18	chr17:38445400-38449400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr17:38445400-38451800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr17:38445400-38452000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:38445400-38459400	Weak transcription	Primary T cells from cord blood	blood
22	chr17:38445400-38459400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:38445600-38449600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr17:38445600-38449600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr17:38445600-38449800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr17:38445600-38449800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr17:38445600-38450000	Strong transcription	Fetal Stomach	stomach
28	chr17:38445600-38457400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:38445600-38459600	Weak transcription	Primary B cells from cord blood	blood
30	chr17:38445600-38460200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:38445600-38462600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr17:38445800-38449000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr17:38445800-38449600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr17:38445800-38449800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr17:38445800-38451600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr17:38445800-38457200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:38446000-38449800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr17:38446000-38451800	Weak transcription	Brain Germinal Matrix	brain
39	chr17:38446000-38452400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr17:38446000-38459400	Strong transcription	Fetal Thymus	thymus
41	chr17:38446000-38461000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr17:38446200-38450800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr17:38446400-38450600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr17:38446600-38448600	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr17:38446600-38448600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr17:38446600-38451000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr17:38446800-38450000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
48	chr17:38447000-38449600	Weak transcription	NHDF-Ad	bronchial
49	chr17:38447000-38449600	Weak transcription	NHLF	lung
50	chr17:38447000-38449800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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