Variant report

Variant	rs16965774
Chromosome Location	chr17:38572477-38572478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38571689..38573604-chr17:38633869..38636651,3	K562	blood:
2	chr17:38571639..38573723-chr17:38715202..38717079,2	K562	blood:
3	chr17:38518730..38520682-chr17:38569502..38573340,3	MCF-7	breast:
4	chr17:38572047..38583621-chr17:38597341..38605150,24	MCF-7	breast:
5	chr17:38519063..38522724-chr17:38572084..38575827,4	K562	blood:
6	chr17:38455293..38459575-chr17:38570214..38574368,4	MCF-7	breast:
7	chr17:38571032..38573663-chr17:38599066..38602957,3	K562	blood:
8	chr17:38571689..38573226-chr17:38635126..38636651,2	K562	blood:
9	chr17:38511730..38513729-chr17:38571391..38573347,2	MCF-7	breast:
10	chr17:38471740..38479367-chr17:38570407..38574457,9	MCF-7	breast:
11	chr17:38571221..38576195-chr17:38597437..38603899,8	K562	blood:
12	chr17:38571246..38572914-chr17:38603298..38604938,2	MCF-7	breast:
13	chr17:38571667..38573665-chr17:38677679..38680655,2	K562	blood:
14	chr17:38518117..38522815-chr17:38572084..38576075,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000183153	Chromatin interaction
ENSG00000270145	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000131746	Chromatin interaction
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11540720	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11867902	1.00[CEU][hapmap]
rs12103533	1.00[EUR][1000 genomes]
rs15685	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16965669	1.00[EUR][1000 genomes]
rs16965734	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16965736	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16965748	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16965778	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616879	0.92[EUR][1000 genomes]
rs17617263	0.92[EUR][1000 genomes]
rs17678959	0.92[EUR][1000 genomes]
rs17678990	0.92[EUR][1000 genomes]
rs17679086	0.92[EUR][1000 genomes]
rs17679361	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17680217	0.92[EUR][1000 genomes]
rs17680410	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17680507	0.92[EUR][1000 genomes]
rs17680624	0.92[EUR][1000 genomes]
rs2012667	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2229773	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs28362320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362321	0.92[EUR][1000 genomes]
rs33998939	0.92[EUR][1000 genomes]
rs34270904	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34300454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35783632	0.92[EUR][1000 genomes]
rs35898909	0.92[EUR][1000 genomes]
rs41283423	0.92[EUR][1000 genomes]
rs4134993	0.92[EUR][1000 genomes]
rs4134998	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4135005	0.92[EUR][1000 genomes]
rs4135007	0.92[EUR][1000 genomes]
rs4135012	0.92[EUR][1000 genomes]
rs4135019	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4135021	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4135027	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4135030	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs45612441	0.92[EUR][1000 genomes]
rs8067519	1.00[EUR][1000 genomes]
rs8071687	1.00[EUR][1000 genomes]
rs9889905	0.85[EUR][1000 genomes]
rs9891944	0.92[EUR][1000 genomes]
rs9894364	1.00[EUR][1000 genomes]
rs9894807	0.85[EUR][1000 genomes]
rs9898500	1.00[EUR][1000 genomes]
rs9903293	1.00[EUR][1000 genomes]
rs9909777	1.00[EUR][1000 genomes]
rs9909811	0.85[EUR][1000 genomes]
rs9910373	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv908223	chr17:38530799-38609187	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38544400-38573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:38545200-38573200	Weak transcription	Gastric	stomach
3	chr17:38546000-38573600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:38546400-38572800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr17:38546400-38573200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:38548400-38572800	Weak transcription	Primary B cells from cord blood	blood
7	chr17:38549800-38573000	Weak transcription	Fetal Intestine Large	intestine
8	chr17:38551000-38573000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr17:38552200-38573400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr17:38557400-38572800	Weak transcription	Fetal Kidney	kidney
11	chr17:38557800-38572800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr17:38559200-38573000	Weak transcription	Primary T cells from cord blood	blood
13	chr17:38559200-38573200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:38559400-38573200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:38559800-38572800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr17:38563200-38572600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr17:38565800-38573000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr17:38567200-38573000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr17:38569200-38572800	Weak transcription	Fetal Lung	lung
20	chr17:38569200-38573000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:38569200-38573000	Weak transcription	Placenta	Placenta
22	chr17:38569800-38573000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr17:38570800-38572800	Weak transcription	Fetal Intestine Small	intestine
24	chr17:38570800-38573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:38571400-38573200	Transcr. at gene 5' and 3'	A549	lung
26	chr17:38571400-38573400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr17:38571600-38572600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr17:38571600-38572600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:38571600-38572600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr17:38571600-38572600	Active TSS	NH-A	brain
31	chr17:38571600-38572800	Enhancers	Fetal Heart	heart
32	chr17:38571600-38572800	Enhancers	Fetal Stomach	stomach
33	chr17:38571600-38573000	Transcr. at gene 5' and 3'	Hela-S3	cervix
34	chr17:38571600-38573400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:38571600-38573400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr17:38571600-38574000	Transcr. at gene 5' and 3'	Dnd41	blood
37	chr17:38571600-38574800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr17:38571600-38574800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr17:38571800-38572600	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
40	chr17:38571800-38572800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:38571800-38572800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr17:38571800-38572800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr17:38571800-38573000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
44	chr17:38571800-38573000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr17:38571800-38573000	Transcr. at gene 5' and 3'	K562	blood
46	chr17:38571800-38573000	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr17:38571800-38573000	Flanking Active TSS	NHLF	lung
48	chr17:38571800-38573200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr17:38571800-38573200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
50	chr17:38571800-38573200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell

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