Variant report

Variant	rs4135019
Chromosome Location	chr17:38452290-38452291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38339993..38341691-chr17:38451589..38454528,2	MCF-7	breast:
2	chr17:38451360..38453153-chr19:16187027..16188684,2	MCF-7	breast:
3	chr17:38450730..38452713-chr17:38472123..38474702,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167460	Chromatin interaction
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10305288	1.00[AFR][1000 genomes]
rs10305296	1.00[AFR][1000 genomes]
rs10305303	1.00[AFR][1000 genomes]
rs10512482	0.92[EUR][1000 genomes]
rs1104761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11540720	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11867902	1.00[CEU][hapmap]
rs12103533	0.92[EUR][1000 genomes]
rs15685	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16965660	0.92[EUR][1000 genomes]
rs16965669	0.92[EUR][1000 genomes]
rs16965734	0.92[EUR][1000 genomes]
rs16965736	0.92[EUR][1000 genomes]
rs16965748	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16965774	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16965778	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17557495	1.00[AFR][1000 genomes]
rs17616365	1.00[AMR][1000 genomes]
rs17616543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17617263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17618397	1.00[AFR][1000 genomes]
rs17678817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17678959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17678990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679038	1.00[AFR][1000 genomes]
rs17679086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679361	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680410	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17680704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2012667	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2229773	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362320	0.92[EUR][1000 genomes]
rs28362321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526298	0.92[EUR][1000 genomes]
rs33998939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34270904	0.92[EUR][1000 genomes]
rs34300454	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs35783632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35898909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41283417	0.92[EUR][1000 genomes]
rs41283423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4134993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4134998	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135021	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135027	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135030	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45612441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7214783	0.85[EUR][1000 genomes]
rs72819623	1.00[AFR][1000 genomes]
rs72819624	1.00[AFR][1000 genomes]
rs72819628	1.00[AFR][1000 genomes]
rs72819630	1.00[AFR][1000 genomes]
rs72819632	1.00[AFR][1000 genomes]
rs72819633	1.00[AFR][1000 genomes]
rs72819651	1.00[AFR][1000 genomes]
rs8067519	0.92[EUR][1000 genomes]
rs8071687	0.92[EUR][1000 genomes]
rs8077482	0.92[EUR][1000 genomes]
rs9889905	0.92[EUR][1000 genomes]
rs9891944	1.00[EUR][1000 genomes]
rs9894364	0.92[EUR][1000 genomes]
rs9894807	0.92[EUR][1000 genomes]
rs9898500	0.92[EUR][1000 genomes]
rs9899425	0.92[EUR][1000 genomes]
rs9900154	0.92[EUR][1000 genomes]
rs9903293	0.92[EUR][1000 genomes]
rs9906274	1.00[EUR][1000 genomes]
rs9909777	0.92[EUR][1000 genomes]
rs9909811	0.92[EUR][1000 genomes]
rs9910373	0.92[EUR][1000 genomes]
rs9915775	0.92[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38444600-38454600	Weak transcription	Ovary	ovary
2	chr17:38444600-38459400	Weak transcription	Brain Angular Gyrus	brain
3	chr17:38444600-38459400	Weak transcription	Spleen	Spleen
4	chr17:38444600-38459600	Weak transcription	Brain Anterior Caudate	brain
5	chr17:38444600-38459600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr17:38444600-38459600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr17:38444800-38459200	Weak transcription	Fetal Intestine Large	intestine
8	chr17:38444800-38459400	Weak transcription	Fetal Kidney	kidney
9	chr17:38444800-38459400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr17:38444800-38459600	Weak transcription	Right Ventricle	heart
11	chr17:38444800-38459600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:38444800-38462600	Weak transcription	Esophagus	oesophagus
13	chr17:38445000-38459600	Weak transcription	Colonic Mucosa	Colon
14	chr17:38445400-38459400	Weak transcription	Primary T cells from cord blood	blood
15	chr17:38445400-38459400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:38445600-38457400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:38445600-38459600	Weak transcription	Primary B cells from cord blood	blood
18	chr17:38445600-38460200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr17:38445600-38462600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr17:38445800-38457200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:38446000-38452400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr17:38446000-38459400	Strong transcription	Fetal Thymus	thymus
23	chr17:38446000-38461000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:38447000-38454600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:38447000-38454600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:38447000-38459200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr17:38447000-38459200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr17:38447000-38459600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:38447000-38459600	Weak transcription	Placenta	Placenta
30	chr17:38447200-38454200	Weak transcription	Fetal Heart	heart
31	chr17:38447200-38459200	Weak transcription	Liver	Liver
32	chr17:38447200-38459400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:38447400-38453400	Strong transcription	NHEK	skin
34	chr17:38447400-38455000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:38447400-38458800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr17:38447400-38459200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr17:38447400-38459200	Strong transcription	A549	lung
38	chr17:38447600-38455600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr17:38447800-38459200	Weak transcription	Fetal Lung	lung
40	chr17:38448000-38452400	Weak transcription	HSMMtube	muscle
41	chr17:38448600-38460000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr17:38449000-38455200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr17:38449200-38460200	Strong transcription	HepG2	liver
44	chr17:38449400-38452400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:38449400-38454000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr17:38449400-38459000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr17:38449400-38459200	Strong transcription	K562	blood
48	chr17:38449600-38452400	Strong transcription	NHLF	lung
49	chr17:38449600-38452600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr17:38449600-38453200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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