The 2.0 version of rSNPBase

Variant report

Variant rs72819630
Chromosome Location chr17:38611126-38611127
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38600800-38613800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr17:38601800-38612600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr17:38601800-38614000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr17:38602200-38614000 Weak transcription Fetal Brain Female brain
5 chr17:38602200-38614400 Weak transcription Brain Angular Gyrus brain
6 chr17:38605000-38614800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr17:38605200-38614400 Weak transcription Thymus Thymus
8 chr17:38605400-38613200 Weak transcription Fetal Thymus thymus
9 chr17:38605400-38616800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
10 chr17:38605600-38612200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr17:38606400-38616400 Weak transcription K562 blood
12 chr17:38606600-38612400 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr17:38606600-38614400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr17:38606600-38617400 Weak transcription Small Intestine intestine
15 chr17:38607000-38615000 Genic enhancers Liver Liver
16 chr17:38607600-38618400 Genic enhancers NHLF lung
17 chr17:38607800-38611200 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr17:38607800-38614000 Weak transcription Brain Hippocampus Middle brain
19 chr17:38607800-38615400 Strong transcription HUVEC blood vessel
20 chr17:38608200-38611200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
21 chr17:38608400-38611200 Genic enhancers Right Ventricle heart
22 chr17:38608400-38613200 Strong transcription Placenta Amnion Placenta Amnion
23 chr17:38608400-38613800 Strong transcription HUES48 Cell Line embryonic stem cell
24 chr17:38608600-38611200 Genic enhancers Stomach Mucosa stomach
25 chr17:38608600-38612800 Weak transcription Pancreas Pancrea
26 chr17:38608600-38613600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr17:38608600-38613800 Strong transcription iPS-20b Cell Line embryonic stem cell
28 chr17:38608600-38613800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr17:38608600-38614000 Strong transcription H9 Cell Line embryonic stem cell
30 chr17:38608600-38614400 Genic enhancers Colon Smooth Muscle Colon
31 chr17:38608600-38615400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr17:38608600-38615600 Strong transcription Dnd41 blood
33 chr17:38608800-38611200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
34 chr17:38608800-38613200 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr17:38608800-38613200 Strong transcription Rectal Mucosa Donor 31 rectum
36 chr17:38608800-38613600 Strong transcription Fetal Intestine Small intestine
37 chr17:38608800-38614200 Weak transcription Brain Substantia Nigra brain
38 chr17:38608800-38615800 Genic enhancers NHDF-Ad bronchial
39 chr17:38608800-38616400 Genic enhancers Osteobl bone
40 chr17:38609000-38611200 Strong transcription Cortex derived primary cultured neurospheres brain
41 chr17:38609000-38611200 Genic enhancers Skeletal Muscle Male skeletal muscle
42 chr17:38609000-38612800 Strong transcription Fetal Intestine Large intestine
43 chr17:38609000-38613200 Weak transcription HSMMtube muscle
44 chr17:38609000-38614000 Strong transcription Placenta Placenta
45 chr17:38609000-38615000 Strong transcription Rectal Mucosa Donor 29 rectum
46 chr17:38609200-38611200 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr17:38609200-38611200 Genic enhancers Adipose Nuclei Adipose
48 chr17:38609200-38611200 Enhancers NHEK skin
49 chr17:38609200-38611800 Strong transcription Breast Myoepithelial Primary Cells Breast
50 chr17:38609200-38613200 Weak transcription Aorta Aorta

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015