Variant report

Variant	rs17557879
Chromosome Location	chr17:38791930-38791931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38779995..38783555-chr17:38789227..38792857,3	MCF-7	breast:
2	chr17:38791190..38792732-chr17:38799523..38801927,2	MCF-7	breast:
3	chr17:38786790..38789659-chr17:38789846..38792079,3	K562	blood:
4	chr17:38791360..38793414-chr17:38804044..38805611,2	K562	blood:
5	chr17:38789697..38792410-chr17:38802338..38804575,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073584	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10305288	1.00[AFR][1000 genomes]
rs10305296	1.00[AFR][1000 genomes]
rs10305303	1.00[AFR][1000 genomes]
rs17557495	1.00[AFR][1000 genomes]
rs17618397	1.00[AFR][1000 genomes]
rs17680507	1.00[AFR][1000 genomes]
rs17680624	1.00[AFR][1000 genomes]
rs17680685	1.00[AFR][1000 genomes]
rs17680704	1.00[AFR][1000 genomes]
rs2012667	1.00[AFR][1000 genomes]
rs72819623	1.00[AFR][1000 genomes]
rs72819624	1.00[AFR][1000 genomes]
rs72819628	1.00[AFR][1000 genomes]
rs72819630	1.00[AFR][1000 genomes]
rs72819632	1.00[AFR][1000 genomes]
rs72819633	1.00[AFR][1000 genomes]
rs72819651	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38781800-38793600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:38782600-38801000	Strong transcription	Primary B cells from cord blood	blood
3	chr17:38783000-38794000	Strong transcription	Fetal Brain Female	brain
4	chr17:38783000-38800200	Strong transcription	Duodenum Mucosa	Duodenum
5	chr17:38783000-38802400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:38783200-38794200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:38783200-38794400	Strong transcription	NH-A	brain
8	chr17:38783200-38794600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:38783200-38799200	Strong transcription	Fetal Muscle Leg	muscle
10	chr17:38783200-38800600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:38783200-38800800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:38783200-38800800	Strong transcription	GM12878-XiMat	blood
13	chr17:38783200-38801400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr17:38783200-38801400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:38783200-38801400	Strong transcription	A549	lung
16	chr17:38783200-38801600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:38783200-38801800	Strong transcription	Fetal Thymus	thymus
18	chr17:38783200-38801800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr17:38783400-38794400	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr17:38783400-38794800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr17:38783400-38800400	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr17:38783400-38800600	Strong transcription	Primary T cells from cord blood	blood
23	chr17:38783400-38801400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:38783400-38801400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:38783400-38801400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:38783400-38801600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:38783400-38801600	Strong transcription	Liver	Liver
28	chr17:38783400-38802000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:38783400-38802200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr17:38783600-38800800	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr17:38783600-38801600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr17:38783600-38802400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr17:38783800-38794200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr17:38783800-38794200	Strong transcription	Brain Hippocampus Middle	brain
35	chr17:38783800-38796000	Strong transcription	Dnd41	blood
36	chr17:38783800-38801400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr17:38783800-38802800	Strong transcription	Placenta	Placenta
38	chr17:38784000-38793000	Strong transcription	Left Ventricle	heart
39	chr17:38784000-38794600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr17:38784000-38794600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr17:38784000-38794800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr17:38784000-38796000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr17:38784000-38796000	Strong transcription	Adipose Nuclei	Adipose
44	chr17:38784000-38799200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr17:38784000-38801600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr17:38784200-38793000	Strong transcription	Brain Germinal Matrix	brain
47	chr17:38784200-38794400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr17:38784200-38799200	Strong transcription	NHDF-Ad	bronchial
49	chr17:38784200-38801800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr17:38784200-38802000	Strong transcription	Hela-S3	cervix

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