Variant report

Variant	rs9896339
Chromosome Location	chr17:38322586-38322587
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28410661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28750099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7206995	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9904120	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9906274	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9909548	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910546	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911936	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38297600-38325200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:38297800-38333000	Strong transcription	Fetal Muscle Trunk	muscle
3	chr17:38297800-38336600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:38298000-38324200	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr17:38298000-38330400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr17:38298000-38330800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:38298200-38324200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:38298200-38324400	Strong transcription	Fetal Stomach	stomach
9	chr17:38298200-38333000	Strong transcription	Fetal Thymus	thymus
10	chr17:38298400-38324200	Weak transcription	Fetal Heart	heart
11	chr17:38298600-38332200	Strong transcription	Fetal Intestine Small	intestine
12	chr17:38301600-38324200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr17:38301800-38324200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:38303000-38324400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr17:38308200-38333200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:38310200-38324200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:38314200-38324200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:38314200-38325400	Strong transcription	Primary T cells from cord blood	blood
19	chr17:38314200-38333000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:38314400-38324000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr17:38314600-38324200	Strong transcription	Fetal Muscle Leg	muscle
22	chr17:38314800-38324400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr17:38314800-38324400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:38314800-38333200	Weak transcription	Right Atrium	heart
25	chr17:38315000-38323800	Strong transcription	Placenta	Placenta
26	chr17:38315000-38324000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr17:38315400-38327800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:38315400-38331000	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr17:38315400-38331400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr17:38315600-38324400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr17:38315600-38333000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr17:38315600-38333000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:38315800-38331400	Strong transcription	Fetal Intestine Large	intestine
34	chr17:38316000-38324000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr17:38316000-38330000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr17:38316200-38333200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr17:38316400-38324600	Strong transcription	Liver	Liver
38	chr17:38316400-38331400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr17:38316600-38328800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr17:38316800-38324400	Strong transcription	Adipose Nuclei	Adipose
41	chr17:38317000-38333000	Strong transcription	Spleen	Spleen
42	chr17:38317200-38324200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr17:38317200-38324400	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr17:38317200-38330600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:38317200-38331000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr17:38317200-38333200	Strong transcription	Thymus	Thymus
47	chr17:38317400-38324400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr17:38317400-38324400	Strong transcription	NH-A	brain
49	chr17:38317400-38324800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr17:38317400-38330400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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