Variant report

Variant	rs9895336
Chromosome Location	chr17:38616358-38616359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38608604..38610880-chr17:38615164..38617497,2	K562	blood:
2	chr17:38616159..38619058-chr17:38623950..38625450,2	K562	blood:
3	chr17:38612531..38614627-chr17:38615912..38617544,2	MCF-7	breast:
4	chr17:38554912..38556460-chr17:38614451..38616397,2	MCF-7	breast:
5	chr17:38615820..38617630-chr17:38655195..38658497,3	MCF-7	breast:
6	chr17:38615734..38617592-chr17:38618155..38620536,2	K562	blood:
7	chr17:38615426..38618640-chr17:38688722..38692627,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131746	Chromatin interaction
ENSG00000131747	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10305293	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10305297	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10305302	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10305316	1.00[EUR][1000 genomes]
rs15685	1.00[MEX][hapmap]
rs16965748	1.00[MEX][hapmap]
rs34300454	1.00[MEX][hapmap]
rs35464732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135021	1.00[MEX][hapmap]
rs72819623	1.00[EUR][1000 genomes]
rs72819624	1.00[EUR][1000 genomes]
rs72819626	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72819628	1.00[EUR][1000 genomes]
rs72819631	0.93[EUR][1000 genomes]
rs72819632	1.00[EUR][1000 genomes]
rs72819633	1.00[EUR][1000 genomes]
rs9303287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38605400-38616800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr17:38606400-38616400	Weak transcription	K562	blood
3	chr17:38606600-38617400	Weak transcription	Small Intestine	intestine
4	chr17:38607600-38618400	Genic enhancers	NHLF	lung
5	chr17:38608800-38616400	Genic enhancers	Osteobl	bone
6	chr17:38610400-38618600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:38611000-38616400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:38612200-38616600	Genic enhancers	Fetal Stomach	stomach
9	chr17:38612400-38619200	Enhancers	Right Atrium	heart
10	chr17:38612600-38616600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:38613000-38616800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:38613000-38617200	Genic enhancers	A549	lung
13	chr17:38613800-38616400	Enhancers	Fetal Kidney	kidney
14	chr17:38613800-38616600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:38613800-38619800	Enhancers	Rectal Smooth Muscle	rectum
16	chr17:38614000-38621000	Enhancers	Ovary	ovary
17	chr17:38614000-38623400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr17:38614200-38616800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:38614200-38629200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr17:38614400-38619600	Enhancers	Colon Smooth Muscle	Colon
21	chr17:38614400-38620200	Enhancers	Placenta	Placenta
22	chr17:38614600-38616400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr17:38614600-38617800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr17:38614600-38618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:38614600-38619600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr17:38614600-38620600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr17:38614800-38617400	Weak transcription	Colonic Mucosa	Colon
28	chr17:38614800-38618000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr17:38614800-38620400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr17:38615000-38617400	Weak transcription	Fetal Intestine Large	intestine
31	chr17:38615000-38618200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr17:38615000-38618800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr17:38615000-38619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr17:38615000-38619400	Enhancers	Liver	Liver
35	chr17:38615000-38619600	Enhancers	Right Ventricle	heart
36	chr17:38615000-38619800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr17:38615000-38620800	Enhancers	Fetal Muscle Trunk	muscle
38	chr17:38615000-38620800	Enhancers	Fetal Muscle Leg	muscle
39	chr17:38615200-38616400	Genic enhancers	Spleen	Spleen
40	chr17:38615200-38618200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr17:38615200-38618600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr17:38615200-38618600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr17:38615400-38616400	Enhancers	Esophagus	oesophagus
44	chr17:38615400-38616400	Weak transcription	Fetal Thymus	thymus
45	chr17:38615400-38616400	Weak transcription	Gastric	stomach
46	chr17:38615400-38616400	Weak transcription	HepG2	liver
47	chr17:38615400-38616600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:38615400-38617400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr17:38615400-38617600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:38615400-38618400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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