Variant report

Variant	rs116542037
Chromosome Location	chr5:112917175-112917176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112917130..112919077-chr5:112922484..112924889,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv520674	chr5:112911165-112942820	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv3433551	chr5:112915953-112919951	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752057	chr5:112916398-112945992	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv1029507	chr5:112916398-112945992	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
10	esv3367549	chr5:112916403-112920101	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
2	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:112889400-112930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:112898200-112921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:112899400-112929400	Weak transcription	HepG2	liver
8	chr5:112904400-112917200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
10	chr5:112907400-112932000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:112910400-112917200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:112910600-112919800	Weak transcription	NHDF-Ad	bronchial
14	chr5:112910600-112920000	Weak transcription	Brain Anterior Caudate	brain
15	chr5:112910600-112927000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:112910600-112927600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:112910600-112927800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:112910600-112933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:112910600-112935200	Weak transcription	Spleen	Spleen
20	chr5:112910600-112935400	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:112910600-112936600	Weak transcription	Colonic Mucosa	Colon
22	chr5:112910600-112942000	Weak transcription	Brain Substantia Nigra	brain
23	chr5:112910800-112919800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:112910800-112919800	Weak transcription	HMEC	breast
25	chr5:112910800-112920000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:112910800-112924400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:112910800-112927600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:112910800-112928400	Weak transcription	A549	lung
29	chr5:112910800-112928600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:112910800-112929200	Weak transcription	Right Ventricle	heart
31	chr5:112910800-112929400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:112910800-112930400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:112910800-112933600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr5:112910800-112933600	Weak transcription	Fetal Stomach	stomach
35	chr5:112910800-112934600	Weak transcription	Gastric	stomach
36	chr5:112910800-112935000	Weak transcription	Pancreas	Pancrea
37	chr5:112910800-112935200	Weak transcription	Esophagus	oesophagus
38	chr5:112910800-112937400	Weak transcription	Fetal Intestine Small	intestine
39	chr5:112910800-112938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:112910800-112942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:112911000-112930000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:112911200-112925400	Weak transcription	Brain Germinal Matrix	brain
43	chr5:112911200-112929000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:112913800-112918000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:112913800-112920800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr5:112914000-112917400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:112914000-112922200	Strong transcription	Dnd41	blood
48	chr5:112915000-112918000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr5:112915000-112918000	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr5:112915000-112918000	Strong transcription	Hela-S3	cervix

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