Variant report

Variant	rs11654572
Chromosome Location	chr17:17339461-17339462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17335195..17342131-chr17:17347291..17351486,7	MCF-7	breast:
2	chr17:17323645..17325361-chr17:17339131..17341105,2	MCF-7	breast:
3	chr17:17338847..17340811-chr17:17396652..17398902,2	MCF-7	breast:
4	chr17:17336920..17339471-chr17:17342851..17344452,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1123297	0.99[ASN][1000 genomes]
rs11650117	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12449517	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12453750	0.99[ASN][1000 genomes]
rs13341175	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1605450	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2012886	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2202703	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28489441	0.91[ASN][1000 genomes]
rs4924834	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4925141	0.99[ASN][1000 genomes]
rs6502596	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7209348	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7209715	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7209929	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7210546	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7212942	0.84[AMR][1000 genomes]
rs7215510	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7216896	0.99[ASN][1000 genomes]
rs7217126	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7501994	0.99[ASN][1000 genomes]
rs8075087	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs925095	0.99[ASN][1000 genomes]
rs9893203	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058849	chr17:17308009-17348548	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1058804	chr17:17308984-17348548	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1062207	chr17:17310099-17344599	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv543234	chr17:17310099-17344599	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv574523	chr17:17310886-17347995	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1056137	chr17:17311017-17348939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv543235	chr17:17311017-17348939	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv515800	chr17:17322196-17344653	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17326200-17343400	Weak transcription	Right Atrium	heart
2	chr17:17330200-17350000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:17334800-17340400	Enhancers	Fetal Thymus	thymus
4	chr17:17335400-17348800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:17336400-17341400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:17337000-17343400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:17337600-17343600	Weak transcription	Dnd41	blood
8	chr17:17337800-17340800	Enhancers	A549	lung
9	chr17:17338000-17339600	Enhancers	NHDF-Ad	bronchial
10	chr17:17338200-17340000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr17:17338400-17339600	Enhancers	HUVEC	blood vessel
12	chr17:17338600-17340600	Enhancers	NHLF	lung
13	chr17:17338800-17340200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:17338800-17343800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:17339200-17339800	Enhancers	NH-A	brain
16	chr17:17339200-17340200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:17339200-17340400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:17339200-17341000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr17:17339200-17341600	Enhancers	Hela-S3	cervix
20	chr17:17339200-17343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr17:17339200-17346800	Weak transcription	Thymus	Thymus
22	chr17:17339400-17340000	Weak transcription	Brain Germinal Matrix	brain
23	chr17:17339400-17342800	Weak transcription	HepG2	liver
24	chr17:17339400-17343800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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