Variant report

Variant	rs11656865
Chromosome Location	chr17:45346489-45346490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45333610..45338031-chr17:45341654..45346712,6	K562	blood:

Variant related genes	Relation type
ENSG00000238419	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10514919	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651904	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657517	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658221	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11868894	0.86[ASN][1000 genomes]
rs11870620	0.95[ASN][1000 genomes]
rs12940207	0.86[ASN][1000 genomes]
rs12941431	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941776	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941780	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941802	0.83[ASN][1000 genomes]
rs2292864	0.85[ASN][1000 genomes]
rs2292866	0.85[ASN][1000 genomes]
rs35265764	0.85[ASN][1000 genomes]
rs3892085	0.87[ASN][1000 genomes]
rs61131650	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62074423	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209700	0.80[EUR][1000 genomes]
rs7219925	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077753	0.87[EUR][1000 genomes]
rs8080254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45336000-45346800	Weak transcription	Fetal Heart	heart
2	chr17:45338000-45352200	Weak transcription	Fetal Muscle Leg	muscle
3	chr17:45341400-45348800	Enhancers	NHDF-Ad	bronchial
4	chr17:45342600-45348400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:45343000-45346600	Enhancers	Fetal Intestine Large	intestine
6	chr17:45343600-45346600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr17:45343600-45352600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr17:45343800-45351200	Weak transcription	Ovary	ovary
9	chr17:45343800-45351200	Weak transcription	Right Ventricle	heart
10	chr17:45343800-45352600	Weak transcription	Spleen	Spleen
11	chr17:45344000-45352600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr17:45344600-45347400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr17:45344800-45346600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:45344800-45348400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:45344800-45350600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr17:45344800-45351800	Weak transcription	Right Atrium	heart
17	chr17:45345000-45347400	Weak transcription	Aorta	Aorta
18	chr17:45345000-45350600	Weak transcription	K562	blood
19	chr17:45345000-45351600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr17:45345000-45351800	Weak transcription	Left Ventricle	heart
21	chr17:45345200-45347200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr17:45345200-45347800	Weak transcription	HSMMtube	muscle
23	chr17:45345200-45350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr17:45345400-45351800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr17:45345800-45346800	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr17:45345800-45350800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr17:45345800-45352000	Weak transcription	NHLF	lung
28	chr17:45346000-45346600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr17:45346000-45347600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr17:45346000-45351000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr17:45346200-45347600	Weak transcription	Osteobl	bone
32	chr17:45346200-45347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr17:45346200-45348400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr17:45346200-45353200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr17:45346400-45346800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
36	chr17:45346400-45347000	Enhancers	Colon Smooth Muscle	Colon

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