Variant report

Variant	rs7219925
Chromosome Location	chr17:45341640-45341641
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10514919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651904	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656865	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657963	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658221	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11868894	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11870620	0.95[ASN][1000 genomes]
rs12940207	0.86[ASN][1000 genomes]
rs12941431	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941802	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16941908	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1806687	0.85[AFR][1000 genomes]
rs2292864	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2292865	0.81[YRI][hapmap]
rs2292866	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs35265764	0.85[ASN][1000 genomes]
rs3785872	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3892085	0.80[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs61131650	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62074423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073827	0.81[YRI][hapmap]
rs8074094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884696	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45333200-45344600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:45334000-45345800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr17:45335600-45343200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr17:45335800-45342600	Weak transcription	NHLF	lung
5	chr17:45335800-45343200	Weak transcription	Right Atrium	heart
6	chr17:45335800-45343600	Weak transcription	Aorta	Aorta
7	chr17:45336000-45346800	Weak transcription	Fetal Heart	heart
8	chr17:45336200-45342000	Weak transcription	HSMM	muscle
9	chr17:45336200-45342600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr17:45336200-45343400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:45336400-45342600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:45336400-45342800	Weak transcription	NH-A	brain
13	chr17:45336400-45342800	Weak transcription	Osteobl	bone
14	chr17:45337200-45342000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:45338000-45352200	Weak transcription	Fetal Muscle Leg	muscle
16	chr17:45339400-45345000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr17:45339800-45343200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr17:45340200-45342800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:45340400-45342800	Weak transcription	Adipose Nuclei	Adipose
20	chr17:45340600-45342000	Weak transcription	Right Ventricle	heart
21	chr17:45340600-45342600	Weak transcription	Colon Smooth Muscle	Colon
22	chr17:45340600-45342800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr17:45340600-45343200	Weak transcription	Left Ventricle	heart
24	chr17:45340600-45343400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr17:45340600-45343400	Weak transcription	Spleen	Spleen
26	chr17:45340800-45342600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr17:45340800-45342800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr17:45341000-45345000	Enhancers	K562	blood
29	chr17:45341200-45342200	Enhancers	HSMMtube	muscle
30	chr17:45341400-45348800	Enhancers	NHDF-Ad	bronchial
31	chr17:45341600-45341800	Enhancers	Psoas Muscle	Psoas
32	chr17:45341600-45342800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links