Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66478447..66480249-chr17:66481824..66483617,2	MCF-7	breast:
2	chr17:66480053..66482691-chr17:66486689..66489527,2	K562	blood:

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11651450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652486	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653551	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11653677	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653751	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943658	0.91[ASN][1000 genomes]
rs12950697	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34392252	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35017053	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35583172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36011531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087481	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66467800-66487000	Weak transcription	Right Atrium	heart
2	chr17:66477400-66483600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr17:66478200-66484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:66478400-66487600	Weak transcription	Gastric	stomach
5	chr17:66480800-66490600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr17:66481400-66486000	Weak transcription	Adipose Nuclei	Adipose
7	chr17:66481400-66488200	Weak transcription	Brain Hippocampus Middle	brain
8	chr17:66481600-66482600	Enhancers	Liver	Liver
9	chr17:66481600-66487000	Weak transcription	Brain Substantia Nigra	brain
10	chr17:66481800-66483600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:66481800-66486200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr17:66482000-66487000	Weak transcription	Placenta	Placenta
13	chr17:66482200-66484200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr17:66482400-66483600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:66482400-66483600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:66482400-66484600	Enhancers	HepG2	liver
17	chr17:66482400-66486200	Weak transcription	Left Ventricle	heart
18	chr17:66482400-66486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr17:66482400-66486400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr17:66482400-66487000	Weak transcription	Ovary	ovary

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