Variant report

Variant	rs62087481
Chromosome Location	chr17:66489803-66489804
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66486129..66489864-chr17:66505965..66510014,4	MCF-7	breast:
2	chr17:66479120..66480633-chr17:66487594..66490135,2	MCF-7	breast:
3	chr17:66489499..66498114-chr17:66506415..66512369,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11651450	0.83[AMR][1000 genomes]
rs11652486	0.81[AMR][1000 genomes]
rs11653551	0.81[AMR][1000 genomes]
rs11653677	0.81[AMR][1000 genomes]
rs11653751	0.83[AMR][1000 genomes]
rs11655259	0.83[AMR][1000 genomes]
rs11657466	0.83[AMR][1000 genomes]
rs11658925	0.83[AMR][1000 genomes]
rs12449539	0.83[EUR][1000 genomes]
rs12950697	0.83[AMR][1000 genomes]
rs34392252	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35017053	0.81[AMR][1000 genomes]
rs35583172	0.83[AMR][1000 genomes]
rs36011531	0.83[AMR][1000 genomes]
rs58489712	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66480800-66490600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr17:66487200-66493800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:66488200-66493400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:66488200-66493800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:66488200-66494600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:66488400-66490000	Enhancers	Adipose Nuclei	Adipose
7	chr17:66488400-66493800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:66488400-66494400	Weak transcription	Ovary	ovary
9	chr17:66488400-66494600	Weak transcription	Gastric	stomach
10	chr17:66488600-66493200	Weak transcription	GM12878-XiMat	blood
11	chr17:66488600-66493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:66488600-66493800	Weak transcription	Spleen	Spleen
13	chr17:66488800-66490400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr17:66488800-66493400	Weak transcription	Primary B cells from cord blood	blood
15	chr17:66488800-66493800	Weak transcription	Colonic Mucosa	Colon
16	chr17:66488800-66493800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr17:66488800-66494000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:66488800-66494200	Weak transcription	Pancreas	Pancrea
19	chr17:66489000-66492600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr17:66489400-66490000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:66489400-66490000	Enhancers	Fetal Muscle Trunk	muscle
22	chr17:66489400-66494200	Weak transcription	Left Ventricle	heart
23	chr17:66489400-66494600	Weak transcription	Right Atrium	heart
24	chr17:66489600-66493800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:66489600-66494600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr17:66489800-66492000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr17:66489800-66492600	Weak transcription	Fetal Heart	heart
28	chr17:66489800-66494200	Weak transcription	Fetal Muscle Leg	muscle

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