Variant report

Variant	rs58489712
Chromosome Location	chr17:66503652-66503653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10445232	0.84[ASN][1000 genomes]
rs11651687	0.96[ASN][1000 genomes]
rs11653616	0.97[ASN][1000 genomes]
rs11657811	0.97[ASN][1000 genomes]
rs12449539	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453086	0.95[ASN][1000 genomes]
rs12941038	0.96[ASN][1000 genomes]
rs2302233	0.82[ASN][1000 genomes]
rs3785906	0.97[ASN][1000 genomes]
rs4281788	0.97[ASN][1000 genomes]
rs62087481	0.82[EUR][1000 genomes]
rs7977	0.95[ASN][1000 genomes]
rs9892782	0.95[ASN][1000 genomes]
rs9913595	0.97[ASN][1000 genomes]
rs9925	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66502000-66505000	Weak transcription	Primary B cells from cord blood	blood
2	chr17:66502000-66507600	Weak transcription	Left Ventricle	heart
3	chr17:66503000-66505200	Enhancers	HepG2	liver
4	chr17:66503200-66504000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:66503200-66504400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr17:66503200-66505000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr17:66503400-66506200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr17:66503600-66503800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:66503600-66504000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:66503600-66504400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:66503600-66504400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr17:66503600-66504400	Enhancers	HSMMtube	muscle
13	chr17:66503600-66504600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr17:66503600-66507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:66503600-66507400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr17:66503600-66507600	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links