Variant report

Variant	rs9913595
Chromosome Location	chr17:66510824-66510825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr17:66510777-66511302	MCF10A-Er-Src	breast:	n/a	n/a
2	CHD1	chr17:66507161-66511463	IMR90	lung:	n/a	n/a
3	POLR2A	chr17:66510709-66511713	GM12878	blood:	n/a	n/a
4	MXI1	chr17:66507120-66510871	IMR90	lung:	n/a	chr17:66508093-66508102 chr17:66508484-66508499 chr17:66508095-66508104
5	POLR2A	chr17:66506962-66511766	IMR90	lung:	n/a	n/a
6	CREB1	chr17:66510806-66511293	HepG2	liver:	n/a	n/a
7	CTCF	chr17:66510820-66510970	HUVEC	blood vessel:	n/a	n/a
8	CTCF	chr17:66510820-66510970	HCM	heart:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:66507070..66510931-chr17:66511371..66513422,6	K562	blood:
2	chr17:66451996..66456192-chr17:66506725..66511948,5	MCF-7	breast:
3	chr17:66452513..66457853-chr17:66506674..66510981,7	MCF-7	breast:
4	chr17:66509822..66512031-chr17:66520719..66523833,3	K562	blood:
5	chr17:66509250..66511874-chr17:66538190..66540879,2	MCF-7	breast:

Variant related genes	Relation type
PRKAR1A	TF binding region
ENSG00000269657	Chromatin interaction
ENSG00000108946	Chromatin interaction
ENSG00000108950	Chromatin interaction
ENSG00000070540	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10445232	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11651687	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653616	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657811	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449539	0.97[ASN][1000 genomes]
rs12453086	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12941038	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2302233	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3785906	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489712	0.97[ASN][1000 genomes]
rs7977	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9892782	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9925	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66507200-66511400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr17:66507400-66511000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr17:66507400-66511000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr17:66507400-66511000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr17:66507400-66511400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:66507400-66513600	Active TSS	Right Ventricle	heart
7	chr17:66507600-66511000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:66507600-66511200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr17:66507600-66511200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr17:66507600-66511200	Active TSS	Left Ventricle	heart
11	chr17:66507600-66511400	Active TSS	Aorta	Aorta
12	chr17:66507600-66511600	Active TSS	Ovary	ovary
13	chr17:66507800-66511000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:66507800-66511000	Active TSS	Fetal Muscle Trunk	muscle
15	chr17:66507800-66511000	Active TSS	Fetal Muscle Leg	muscle
16	chr17:66507800-66511000	Active TSS	Psoas Muscle	Psoas
17	chr17:66507800-66511000	Active TSS	HMEC	breast
18	chr17:66507800-66511000	Active TSS	K562	blood
19	chr17:66507800-66511200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:66507800-66511200	Active TSS	HSMMtube	muscle
21	chr17:66507800-66511400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr17:66507800-66511400	Active TSS	Fetal Heart	heart
23	chr17:66507800-66511800	Active TSS	Stomach Smooth Muscle	stomach
24	chr17:66508000-66511800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr17:66508200-66511000	Active TSS	HSMM	muscle
26	chr17:66508800-66511800	Active TSS	Right Atrium	heart
27	chr17:66509200-66511000	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr17:66509200-66511200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr17:66509400-66511600	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr17:66509600-66511000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr17:66509600-66511000	Weak transcription	Lung	lung
32	chr17:66509600-66511200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr17:66509600-66511400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:66509600-66513000	Weak transcription	Spleen	Spleen
35	chr17:66509600-66513400	Weak transcription	Gastric	stomach
36	chr17:66509600-66513600	Weak transcription	Esophagus	oesophagus
37	chr17:66509600-66525800	Weak transcription	Pancreas	Pancrea
38	chr17:66509800-66511000	Weak transcription	Small Intestine	intestine
39	chr17:66509800-66511400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr17:66509800-66511400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:66509800-66511600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr17:66509800-66511800	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr17:66509800-66511800	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr17:66509800-66514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr17:66510000-66511000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr17:66510000-66511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr17:66510000-66511400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr17:66510000-66511600	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr17:66510000-66511600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr17:66510000-66511800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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