Variant report

Variant	rs11658804
Chromosome Location	chr17:17826670-17826671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17826163..17829197-chr17:17831248..17834653,3	MCF-7	breast:
2	chr17:17822649..17827287-chr17:17828107..17833962,6	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11652819	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11654240	0.86[EUR][1000 genomes]
rs11656629	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11656725	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs33997182	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34434158	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60743050	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17810800-17838400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:17811400-17838400	Weak transcription	Primary T cells from cord blood	blood
3	chr17:17814800-17833200	Weak transcription	Aorta	Aorta
4	chr17:17817600-17831600	Weak transcription	Fetal Brain Female	brain
5	chr17:17817800-17838200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:17821000-17828400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:17821200-17829000	Enhancers	NHEK	skin
8	chr17:17821600-17827200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:17821800-17827200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:17821800-17827200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:17821800-17828400	Enhancers	HMEC	breast
12	chr17:17822000-17827000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:17822000-17827200	Enhancers	Brain Hippocampus Middle	brain
14	chr17:17822000-17836600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:17822200-17827000	Enhancers	Brain Substantia Nigra	brain
16	chr17:17822400-17828400	Enhancers	NH-A	brain
17	chr17:17822600-17826800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr17:17823200-17838000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr17:17823200-17838200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr17:17823400-17828200	Weak transcription	GM12878-XiMat	blood
21	chr17:17823400-17836400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr17:17823400-17838200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr17:17823600-17827800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr17:17824000-17826800	Enhancers	Liver	Liver
25	chr17:17824000-17827000	Enhancers	Brain Cingulate Gyrus	brain
26	chr17:17824000-17827000	Enhancers	Stomach Mucosa	stomach
27	chr17:17824000-17829200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr17:17824200-17826800	Enhancers	Fetal Stomach	stomach
29	chr17:17824200-17826800	Flanking Active TSS	A549	lung
30	chr17:17824200-17827000	Enhancers	Fetal Intestine Large	intestine
31	chr17:17824200-17827000	Enhancers	Fetal Intestine Small	intestine
32	chr17:17824200-17827200	Enhancers	Colon Smooth Muscle	Colon
33	chr17:17824400-17826800	Enhancers	Left Ventricle	heart
34	chr17:17824400-17827000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr17:17824400-17827000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr17:17824600-17831200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr17:17824800-17827000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr17:17824800-17827000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr17:17824800-17828600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr17:17824800-17838200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:17825000-17826800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr17:17825000-17828400	Enhancers	Osteobl	bone
43	chr17:17825000-17837600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr17:17825400-17829200	Weak transcription	Fetal Thymus	thymus
45	chr17:17825400-17830400	Weak transcription	Gastric	stomach
46	chr17:17825800-17827000	Enhancers	Stomach Smooth Muscle	stomach
47	chr17:17825800-17827000	Genic enhancers	HSMM	muscle
48	chr17:17825800-17829200	Weak transcription	Lung	lung
49	chr17:17826000-17830400	Weak transcription	Psoas Muscle	Psoas
50	chr17:17826000-17831000	Weak transcription	Esophagus	oesophagus

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