Variant report

Variant	rs33997182
Chromosome Location	chr17:17921995-17921996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17919283..17922908-chr17:17926461..17929457,3	MCF-7	breast:
2	chr17:17908008..17910632-chr17:17920796..17923362,2	MCF-7	breast:
3	chr17:17862068..17864247-chr17:17920518..17922491,2	K562	blood:

Variant related genes	Relation type
ENSG00000171962	Chromatin interaction
ENSG00000171953	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11652819	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11654240	0.90[EUR][1000 genomes]
rs11656629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11656725	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11658804	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34434158	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60743050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
5	nsv482879	chr17:17802463-17989273	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv510701	chr17:17850474-17955485	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17906200-17941400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:17906600-17929000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:17908400-17928400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr17:17908600-17932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:17908800-17941200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr17:17910200-17926400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr17:17910400-17923200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr17:17910400-17924400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:17910800-17925800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr17:17910800-17929200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:17911000-17930600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:17911400-17923800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:17911600-17923200	Weak transcription	Hela-S3	cervix
14	chr17:17912000-17928800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr17:17912000-17930800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:17912400-17928400	Weak transcription	NHDF-Ad	bronchial
17	chr17:17913000-17924600	Weak transcription	NHLF	lung
18	chr17:17913000-17928200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:17913000-17928200	Weak transcription	HMEC	breast
20	chr17:17913200-17928600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr17:17913400-17924400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr17:17915000-17929000	Weak transcription	A549	lung
23	chr17:17915200-17922400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr17:17916400-17936600	Weak transcription	Fetal Kidney	kidney
25	chr17:17917400-17922600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:17917400-17925600	Strong transcription	Fetal Intestine Large	intestine
27	chr17:17917400-17926000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr17:17917400-17928400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr17:17917400-17936600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr17:17917600-17926600	Strong transcription	Fetal Stomach	stomach
31	chr17:17917800-17922200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:17917800-17929200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr17:17918000-17922800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr17:17918000-17925200	Strong transcription	Placenta	Placenta
35	chr17:17918000-17925400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr17:17918000-17925600	Strong transcription	Primary T cells from cord blood	blood
37	chr17:17918000-17925800	Strong transcription	NHEK	skin
38	chr17:17918000-17928200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr17:17918000-17929400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:17918000-17932200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr17:17918000-17932600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr17:17918400-17923200	Weak transcription	GM12878-XiMat	blood
43	chr17:17918600-17925400	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr17:17918600-17925400	Strong transcription	Thymus	Thymus
45	chr17:17918600-17926600	Strong transcription	Fetal Intestine Small	intestine
46	chr17:17918800-17922800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr17:17918800-17924000	Enhancers	Fetal Heart	heart
48	chr17:17918800-17924400	Weak transcription	Colon Smooth Muscle	Colon
49	chr17:17919200-17922600	Weak transcription	Brain Germinal Matrix	brain
50	chr17:17919400-17922800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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