Variant report

Variant	rs116593733
Chromosome Location	chr4:86655887-86655888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:86655699..86658214-chr4:86658665..86660389,2	K562	blood:
2	chr4:86655653..86657316-chr4:86662237..86664343,2	MCF-7	breast:
3	chr4:86651967..86654284-chr4:86654909..86657180,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763373	chr4:86655128-86673695	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86647200-86658200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:86647800-86656600	Weak transcription	Brain Anterior Caudate	brain
3	chr4:86647800-86656600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:86647800-86662600	Weak transcription	Left Ventricle	heart
5	chr4:86647800-86662600	Weak transcription	Spleen	Spleen
6	chr4:86648400-86662600	Weak transcription	Pancreas	Pancrea
7	chr4:86650400-86662400	Weak transcription	Adipose Nuclei	Adipose
8	chr4:86650800-86656000	Weak transcription	HSMMtube	muscle
9	chr4:86653000-86658600	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:86653800-86662200	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:86654600-86656200	Enhancers	Primary B cells from cord blood	blood
12	chr4:86654600-86656400	Enhancers	Brain Substantia Nigra	brain
13	chr4:86654600-86657000	Enhancers	Brain Hippocampus Middle	brain
14	chr4:86654600-86659000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:86654800-86656200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:86655000-86657000	Enhancers	Brain Cingulate Gyrus	brain
17	chr4:86655000-86664200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:86655200-86656000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr4:86655200-86656200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:86655200-86656400	Enhancers	Fetal Heart	heart
21	chr4:86655200-86656400	Enhancers	HUVEC	blood vessel
22	chr4:86655200-86656600	Enhancers	NHDF-Ad	bronchial
23	chr4:86655200-86659400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:86655400-86656200	Enhancers	Stomach Mucosa	stomach
25	chr4:86655400-86656600	Enhancers	Hela-S3	cervix
26	chr4:86655400-86656800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:86655400-86657200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:86655400-86660000	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:86655600-86656000	Weak transcription	Brain Angular Gyrus	brain
30	chr4:86655600-86656200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:86655600-86656400	Genic enhancers	HSMM	muscle
32	chr4:86655600-86661600	Weak transcription	A549	lung
33	chr4:86655800-86656400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr4:86655800-86656400	Weak transcription	Small Intestine	intestine
35	chr4:86655800-86658000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links