Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11661998	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11662121	0.81[EUR][1000 genomes]
rs11664438	0.81[ASN][1000 genomes]
rs12455523	0.80[EUR][1000 genomes]
rs1352038	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1485813	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1905909	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28375209	0.80[EUR][1000 genomes]
rs34605545	0.81[EUR][1000 genomes]
rs4239447	0.80[EUR][1000 genomes]
rs4542732	0.80[EUR][1000 genomes]
rs4800786	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800791	1.00[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs4800792	0.83[EUR][1000 genomes]
rs55866164	0.81[EUR][1000 genomes]
rs56182142	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8094873	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949078	0.80[EUR][1000 genomes]
rs9953799	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9954485	0.80[EUR][1000 genomes]
rs9957874	0.80[EUR][1000 genomes]
rs9965961	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24678800-24679000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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