Variant report
| Variant | rs8094873 |
|---|---|
| Chromosome Location | chr18:24679652-24679653 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11661254 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11661998 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11662121 | 0.81[EUR][1000 genomes] |
| rs11664438 | 0.81[ASN][1000 genomes] |
| rs12455523 | 0.80[EUR][1000 genomes] |
| rs1352038 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1485813 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1905909 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28375209 | 0.80[EUR][1000 genomes] |
| rs34605545 | 0.81[EUR][1000 genomes] |
| rs4239447 | 0.80[EUR][1000 genomes] |
| rs4542732 | 0.80[EUR][1000 genomes] |
| rs4800786 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4800791 | 1.00[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs4800792 | 0.83[EUR][1000 genomes] |
| rs55866164 | 0.81[EUR][1000 genomes] |
| rs56182142 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9949078 | 0.80[EUR][1000 genomes] |
| rs9953799 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9954485 | 0.80[EUR][1000 genomes] |
| rs9957874 | 0.80[EUR][1000 genomes] |
| rs9965961 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833600 | chr18:24473894-24681019 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1067103 | chr18:24524011-24760469 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv543668 | chr18:24524011-24760469 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv909473 | chr18:24655235-24792075 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs8094873 | HRH4 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:24679000-24691400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr18:24679600-24688000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
