Variant report

Variant	rs11662631
Chromosome Location	chr18:28904056-28904057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28902016..28904959-chr18:28905023..28907896,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10438930	0.83[AMR][1000 genomes]
rs11081688	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11081689	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11081690	0.85[AMR][1000 genomes]
rs11081691	0.82[AMR][1000 genomes]
rs1154851	0.84[AMR][1000 genomes]
rs11660608	0.85[AMR][1000 genomes]
rs11663622	0.85[AMR][1000 genomes]
rs11663676	0.85[AMR][1000 genomes]
rs11872734	0.85[AMR][1000 genomes]
rs11875510	0.81[AMR][1000 genomes]
rs11875560	0.81[AMR][1000 genomes]
rs12607370	0.85[AMR][1000 genomes]
rs12962355	0.85[AMR][1000 genomes]
rs12963302	0.84[AMR][1000 genomes]
rs12967407	0.85[AMR][1000 genomes]
rs1426311	0.81[AMR][1000 genomes]
rs1460599	0.95[AMR][1000 genomes]
rs2007149	0.85[AMR][1000 genomes]
rs2114269	0.84[AMR][1000 genomes]
rs2162273	0.81[AMR][1000 genomes]
rs2199301	0.85[AMR][1000 genomes]
rs2219582	0.85[AMR][1000 genomes]
rs2219583	0.85[AMR][1000 genomes]
rs2901124	0.81[AMR][1000 genomes]
rs2901125	0.85[AMR][1000 genomes]
rs35257361	0.85[AMR][1000 genomes]
rs35382145	0.81[AMR][1000 genomes]
rs6506915	0.85[AMR][1000 genomes]
rs6506916	0.85[AMR][1000 genomes]
rs7231346	0.84[AMR][1000 genomes]
rs7234662	0.85[AMR][1000 genomes]
rs7234854	0.85[AMR][1000 genomes]
rs7235354	0.85[AMR][1000 genomes]
rs7235951	0.84[AMR][1000 genomes]
rs7235975	0.84[AMR][1000 genomes]
rs7236225	0.82[AMR][1000 genomes]
rs7236309	0.85[AMR][1000 genomes]
rs7236370	0.84[AMR][1000 genomes]
rs7237370	0.81[AMR][1000 genomes]
rs7237383	0.84[AMR][1000 genomes]
rs7237419	0.84[AMR][1000 genomes]
rs765054	0.85[AMR][1000 genomes]
rs8087410	0.81[AMR][1000 genomes]
rs8088418	0.81[AMR][1000 genomes]
rs8091151	0.85[AMR][1000 genomes]
rs8091579	0.81[AMR][1000 genomes]
rs8091847	0.81[AMR][1000 genomes]
rs8091934	0.81[AMR][1000 genomes]
rs9947296	0.81[AMR][1000 genomes]
rs9947444	0.81[AMR][1000 genomes]
rs9950209	0.85[AMR][1000 genomes]
rs9950622	0.85[AMR][1000 genomes]
rs9956026	0.85[AMR][1000 genomes]
rs9962740	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28899600-28927200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:28900600-28904600	Weak transcription	NHEK	skin
3	chr18:28901400-28904400	Weak transcription	Liver	Liver

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