Variant report

Variant	rs11662754
Chromosome Location	chr18:8956516-8956517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10775445	0.86[AFR][1000 genomes]
rs2127878	0.86[AFR][1000 genomes]
rs2170299	0.86[AFR][1000 genomes]
rs56132876	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8949800-8959000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:8949800-8959000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:8949800-8962200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:8950000-8958600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:8952200-8960400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:8952400-8959400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr18:8952400-8961000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr18:8953600-8960600	Weak transcription	Osteobl	bone
9	chr18:8954200-8959600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr18:8955600-8959600	Enhancers	HepG2	liver
11	chr18:8955800-8957200	Enhancers	Stomach Mucosa	stomach
12	chr18:8956000-8957000	Enhancers	K562	blood
13	chr18:8956000-8957200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr18:8956200-8956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr18:8956200-8957000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr18:8956200-8958800	Weak transcription	Gastric	stomach
17	chr18:8956400-8957000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr18:8956400-8957400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr18:8956400-8957600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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