Variant report

Variant	rs2170299
Chromosome Location	chr18:8968220-8968221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10502385	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10775445	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11662754	0.86[AFR][1000 genomes]
rs12454318	0.82[ASN][1000 genomes]
rs12454319	0.82[ASN][1000 genomes]
rs2127878	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9964650	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8959400-8969000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:8960200-8970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
4	chr18:8963200-8970200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:8963400-8970200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:8963800-8970000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:8964400-8970000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr18:8965600-8970600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr18:8966200-8968800	Enhancers	Primary B cells from peripheral blood	blood
11	chr18:8967200-8970000	Weak transcription	K562	blood
12	chr18:8967800-8969200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr18:8968200-8969000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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