Variant report

Variant	rs11663448
Chromosome Location	chr18:7765570-7765571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10502360	0.80[ASN][1000 genomes]
rs1446081	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155524	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4798593	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4798595	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs606802	0.81[EUR][1000 genomes]
rs620216	0.81[EUR][1000 genomes]
rs655078	0.80[EUR][1000 genomes]
rs7227507	0.80[ASN][1000 genomes]
rs7242450	0.80[ASN][1000 genomes]
rs746128	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867902	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs875530	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1067394	chr18:7730116-7768536	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv431970	chr18:7732188-7770950	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv576423	chr18:7732917-7788329	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv576425	chr18:7747873-7859757	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7748600-7784000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr18:7754800-7766400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:7755000-7765800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:7755600-7766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:7756200-7772200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr18:7761800-7766600	Weak transcription	Aorta	Aorta
7	chr18:7761800-7789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr18:7762000-7770200	Weak transcription	Colon Smooth Muscle	Colon
9	chr18:7762000-7772000	Weak transcription	Fetal Stomach	stomach
10	chr18:7762200-7767200	Weak transcription	HUVEC	blood vessel
11	chr18:7762200-7773400	Weak transcription	Fetal Intestine Small	intestine
12	chr18:7762400-7766000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr18:7762400-7766400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:7762400-7766400	Weak transcription	Gastric	stomach
15	chr18:7762400-7766400	Weak transcription	Left Ventricle	heart
16	chr18:7762400-7782200	Weak transcription	Lung	lung
17	chr18:7762400-7783200	Weak transcription	Ovary	ovary
18	chr18:7762600-7788600	Weak transcription	HepG2	liver
19	chr18:7762800-7766400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr18:7762800-7768000	Weak transcription	Thymus	Thymus
21	chr18:7762800-7787400	Weak transcription	Right Atrium	heart
22	chr18:7763200-7766400	Weak transcription	Psoas Muscle	Psoas
23	chr18:7763400-7770000	Weak transcription	Fetal Thymus	thymus
24	chr18:7763800-7766000	Weak transcription	Fetal Heart	heart
25	chr18:7763800-7767200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr18:7764400-7766400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr18:7764800-7765800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr18:7764800-7766000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr18:7764800-7766400	Weak transcription	Right Ventricle	heart
30	chr18:7764800-7766600	Weak transcription	Pancreas	Pancrea
31	chr18:7765000-7766000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr18:7765000-7766000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr18:7765000-7766400	Weak transcription	A549	lung
34	chr18:7765000-7778200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr18:7765200-7765600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr18:7765200-7765600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr18:7765200-7765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr18:7765200-7766600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr18:7765200-7767000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr18:7765400-7766400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr18:7765400-7767200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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