Variant report

Variant	rs875530
Chromosome Location	chr18:7774104-7774105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10502360	0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs11663448	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446081	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1940350	0.84[ASN][1000 genomes]
rs2155524	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28583239	0.80[ASN][1000 genomes]
rs4798593	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4798595	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs602337	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs606802	0.87[EUR][1000 genomes]
rs620216	0.87[EUR][1000 genomes]
rs653973	0.85[CEU][hapmap]
rs655078	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs7227507	0.83[ASN][1000 genomes]
rs7233842	0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs7242450	0.83[ASN][1000 genomes]
rs746128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs867902	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949027	0.86[CHD][hapmap];0.84[ASN][1000 genomes]
rs9963051	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv576423	chr18:7732917-7788329	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv576425	chr18:7747873-7859757	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7748600-7784000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr18:7761800-7789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:7762400-7782200	Weak transcription	Lung	lung
4	chr18:7762400-7783200	Weak transcription	Ovary	ovary
5	chr18:7762600-7788600	Weak transcription	HepG2	liver
6	chr18:7762800-7787400	Weak transcription	Right Atrium	heart
7	chr18:7765000-7778200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:7766800-7811200	Weak transcription	Aorta	Aorta
9	chr18:7767200-7774800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:7767200-7783200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr18:7767200-7812400	Weak transcription	Pancreas	Pancrea
12	chr18:7767600-7778400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr18:7771800-7775400	Weak transcription	Fetal Brain Male	brain
14	chr18:7772000-7776400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr18:7772000-7777800	Weak transcription	A549	lung
16	chr18:7772200-7776200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr18:7772200-7782200	Weak transcription	Brain Hippocampus Middle	brain
18	chr18:7772200-7789400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:7772800-7775200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:7772800-7775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr18:7772800-7778400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:7772800-7778400	Weak transcription	Left Ventricle	heart
23	chr18:7772800-7783000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr18:7772800-7783200	Weak transcription	Right Ventricle	heart
25	chr18:7773000-7776800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:7773000-7778000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:7773000-7783200	Weak transcription	Placenta	Placenta
28	chr18:7773200-7775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr18:7773200-7787200	Weak transcription	Fetal Heart	heart
30	chr18:7773800-7775000	Genic enhancers	Fetal Thymus	thymus
31	chr18:7774000-7774400	Weak transcription	Thymus	Thymus
32	chr18:7774000-7790000	Weak transcription	Psoas Muscle	Psoas

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