Variant report

Variant	rs11664214
Chromosome Location	chr18:45677928-45677929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45671241..45673397-chr18:45675712..45678657,2	MCF-7	breast:
2	chr18:45677575..45679860-chr18:45748750..45750379,2	MCF-7	breast:
3	chr18:45666537..45669194-chr18:45677559..45680379,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11082658	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11660174	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11660636	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11663233	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4940291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940298	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61031739	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7238859	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72922114	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72922118	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72922129	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72922145	1.00[AFR][1000 genomes]
rs9952796	0.94[ASN][1000 genomes]
rs9973062	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9973065	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv517835	chr18:45672940-45678479	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45669600-45678200	Weak transcription	Spleen	Spleen
4	chr18:45670400-45678000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:45672000-45679200	Weak transcription	Esophagus	oesophagus
6	chr18:45675800-45682800	Enhancers	Placenta	Placenta
7	chr18:45676000-45679200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr18:45676000-45679800	Weak transcription	Pancreas	Pancrea
9	chr18:45677200-45678200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:45677200-45681200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:45677200-45682200	Enhancers	Hela-S3	cervix
12	chr18:45677400-45681800	Enhancers	Stomach Mucosa	stomach
13	chr18:45677600-45678600	Enhancers	Duodenum Mucosa	Duodenum
14	chr18:45677600-45678600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr18:45677600-45678600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr18:45677600-45680000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr18:45677800-45678400	Enhancers	Right Atrium	heart
18	chr18:45677800-45678400	Enhancers	Small Intestine	intestine
19	chr18:45677800-45678600	Enhancers	Fetal Muscle Trunk	muscle
20	chr18:45677800-45678600	Enhancers	Fetal Muscle Leg	muscle
21	chr18:45677800-45678600	Enhancers	HSMMtube	muscle
22	chr18:45677800-45678800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr18:45677800-45680800	Enhancers	Fetal Intestine Large	intestine
24	chr18:45677800-45680800	Enhancers	Gastric	stomach
25	chr18:45677800-45682200	Enhancers	Ovary	ovary

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