Variant report

Variant	rs7238859
Chromosome Location	chr18:45671405-45671406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11660174	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11660636	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11663233	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11664214	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4940291	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4940298	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61031739	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72922114	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72922118	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72922129	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9973062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9973065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45668400-45671600	Enhancers	Placenta	Placenta
3	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:45669600-45671600	Weak transcription	Esophagus	oesophagus
5	chr18:45669600-45678200	Weak transcription	Spleen	Spleen
6	chr18:45669800-45675000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr18:45670000-45674800	Weak transcription	Stomach Mucosa	stomach
8	chr18:45670200-45675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:45670400-45674600	Weak transcription	Hela-S3	cervix
10	chr18:45670400-45678000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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