Variant report

Variant	rs11664578
Chromosome Location	chr18:9056039-9056040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9049343..9052176-chr18:9054844..9057806,2	MCF-7	breast:
2	chr18:8981074..8983974-chr18:9054070..9056499,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10468793	0.93[ASN][1000 genomes]
rs11662294	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11665492	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13381712	0.88[ASN][1000 genomes]
rs13381737	0.92[ASN][1000 genomes]
rs16954740	0.93[ASN][1000 genomes]
rs16954743	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16954746	0.93[ASN][1000 genomes]
rs1940459	0.93[ASN][1000 genomes]
rs1940460	0.93[ASN][1000 genomes]
rs61528529	0.93[ASN][1000 genomes]
rs6506637	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6506638	0.89[ASN][1000 genomes]
rs7228816	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8093805	0.93[ASN][1000 genomes]
rs9973017	0.90[ASN][1000 genomes]
rs9973018	0.93[ASN][1000 genomes]
rs9973019	0.93[ASN][1000 genomes]
rs9973027	0.93[ASN][1000 genomes]
rs9973029	0.93[ASN][1000 genomes]
rs9973049	0.93[ASN][1000 genomes]
rs9973111	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9054200-9059600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:9054400-9056200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr18:9054400-9056400	Enhancers	NHEK	skin
4	chr18:9054400-9056600	Enhancers	HMEC	breast
5	chr18:9054600-9056400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:9054600-9056400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr18:9054600-9056600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:9054600-9057000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr18:9055400-9056200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr18:9055800-9056200	Enhancers	Stomach Mucosa	stomach
11	chr18:9055800-9060600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr18:9056000-9056200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:9056000-9056200	Enhancers	Fetal Muscle Trunk	muscle
14	chr18:9056000-9056400	Enhancers	Esophagus	oesophagus
15	chr18:9056000-9057800	Weak transcription	K562	blood
16	chr18:9056000-9058000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr18:9056000-9058000	Weak transcription	Liver	Liver
18	chr18:9056000-9058000	Weak transcription	Ovary	ovary
19	chr18:9056000-9058000	Weak transcription	NHDF-Ad	bronchial
20	chr18:9056000-9058200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr18:9056000-9058200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr18:9056000-9061400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr18:9056000-9061400	Weak transcription	Monocytes-CD14+_RO01746	blood

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