Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9039718..9042589-chr18:9051374..9053400,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10468793	1.00[ASN][1000 genomes]
rs11662294	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11664578	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11665492	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381712	0.95[ASN][1000 genomes]
rs13381737	0.99[ASN][1000 genomes]
rs16954740	1.00[ASN][1000 genomes]
rs16954743	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954746	1.00[ASN][1000 genomes]
rs1940459	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1940460	1.00[ASN][1000 genomes]
rs61528529	1.00[ASN][1000 genomes]
rs6506638	0.96[ASN][1000 genomes]
rs7228816	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8093805	1.00[ASN][1000 genomes]
rs9973017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9973018	1.00[ASN][1000 genomes]
rs9973019	1.00[ASN][1000 genomes]
rs9973027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9973029	1.00[ASN][1000 genomes]
rs9973049	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9973111	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9049600-9054600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:9050200-9054400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr18:9051400-9054400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr18:9052200-9053600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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