Variant report

Variant	rs11666708
Chromosome Location	chr19:37887110-37887111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1019494	0.87[ASN][1000 genomes]
rs10419281	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10421436	0.85[EUR][1000 genomes]
rs10425719	0.80[EUR][1000 genomes]
rs11083420	0.85[ASN][1000 genomes]
rs11083423	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12462487	0.85[ASN][1000 genomes]
rs12462546	0.81[ASN][1000 genomes]
rs12462708	0.82[ASN][1000 genomes]
rs12981359	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12981830	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1545755	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs185368	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs185369	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1968251	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2385180	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2385181	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2431992	0.91[ASN][1000 genomes]
rs256733	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs256735	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs256740	0.94[ASN][1000 genomes]
rs256744	0.94[ASN][1000 genomes]
rs34410821	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35470250	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4344867	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs502546	0.86[ASN][1000 genomes]
rs55755939	0.91[ASN][1000 genomes]
rs55926714	0.83[ASN][1000 genomes]
rs6508721	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6508725	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7247090	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7254009	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73025481	0.89[ASN][1000 genomes]
rs8109103	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11666708	AC012309.5	cis	Thyroid	GTEx
rs11666708	AC012309.5	cis	Esophagus Muscularis	GTEx
rs11666708	AC012309.5	cis	Heart Left Ventricle	GTEx
rs11666708	ZNF585A	Cis_1M	lymphoblastoid	RTeQTL
rs11666708	AC012309.5	cis	Artery Tibial	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37864600-37890600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37884600-37896800	ZNF genes & repeats	Liver	Liver
3	chr19:37885600-37889200	Weak transcription	Pancreas	Pancrea
4	chr19:37886600-37887800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr19:37887000-37888400	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links