Variant report

Variant	rs11669010
Chromosome Location	chr19:19632378-19632379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19627011..19629674-chr19:19631625..19633542,2	MCF-7	breast:
2	chr19:19628992..19634294-chr19:19634431..19640068,9	K562	blood:
3	chr19:19630106..19632740-chr19:19655430..19658007,2	K562	blood:
4	chr19:19630109..19632757-chr19:19650761..19652329,2	MCF-7	breast:
5	chr19:19625442..19631834-chr19:19631841..19636968,12	K562	blood:
6	chr19:19630644..19633872-chr19:19738834..19741088,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250067	Chromatin interaction
ENSG00000178093	Chromatin interaction
ENSG00000064547	Chromatin interaction
ENSG00000160161	Chromatin interaction
ENSG00000186010	Chromatin interaction
ENSG00000258674	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11669204	1.00[AFR][1000 genomes]
rs59327775	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv911307	chr19:19631655-19657143	Bivalent Enhancer Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv911308	chr19:19631655-19663850	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19627600-19636200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:19628000-19634800	Weak transcription	Fetal Kidney	kidney
3	chr19:19628000-19635000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr19:19628000-19636000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr19:19628000-19638000	Weak transcription	Fetal Lung	lung
6	chr19:19628000-19640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr19:19628200-19636200	Weak transcription	Fetal Heart	heart
8	chr19:19628200-19636200	Weak transcription	Right Atrium	heart
9	chr19:19628200-19642800	Weak transcription	Stomach Mucosa	stomach
10	chr19:19628200-19643000	Weak transcription	HUVEC	blood vessel
11	chr19:19628400-19632400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:19628400-19634800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:19628400-19639200	Weak transcription	Psoas Muscle	Psoas
14	chr19:19628400-19640800	Weak transcription	HMEC	breast
15	chr19:19628400-19642800	Weak transcription	Hela-S3	cervix
16	chr19:19628600-19633000	Strong transcription	Fetal Stomach	stomach
17	chr19:19628600-19635800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr19:19628600-19636400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:19629000-19632400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr19:19629000-19632800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:19629000-19636800	Weak transcription	Colon Smooth Muscle	Colon
22	chr19:19629000-19637200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:19629000-19638600	Weak transcription	HepG2	liver
24	chr19:19629000-19643600	Weak transcription	Small Intestine	intestine
25	chr19:19629200-19632800	Strong transcription	Fetal Intestine Small	intestine
26	chr19:19629800-19632400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr19:19630000-19632400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:19630000-19632400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr19:19630000-19632400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr19:19630000-19632400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr19:19630000-19632400	Strong transcription	Placenta	Placenta
32	chr19:19630200-19633600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr19:19630400-19632400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr19:19630400-19632400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr19:19630400-19639200	Weak transcription	Fetal Brain Male	brain
36	chr19:19630400-19643000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr19:19630600-19632400	Strong transcription	Brain Germinal Matrix	brain
38	chr19:19630600-19633600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr19:19630600-19634800	Weak transcription	Right Ventricle	heart
40	chr19:19630600-19636000	Weak transcription	Esophagus	oesophagus
41	chr19:19630600-19636200	Weak transcription	Fetal Brain Female	brain
42	chr19:19630600-19636800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr19:19630600-19642800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:19630600-19651800	Weak transcription	A549	lung
45	chr19:19630800-19632400	Strong transcription	Left Ventricle	heart
46	chr19:19630800-19632600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr19:19630800-19634800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr19:19630800-19634800	Weak transcription	Gastric	stomach
49	chr19:19630800-19634800	Weak transcription	Ovary	ovary
50	chr19:19630800-19634800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links