Variant report

Variant	rs11673192
Chromosome Location	chr19:37572490-37572491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10403679	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10420554	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10424584	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1047333	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11084871	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667146	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11670216	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11673344	0.82[EUR][1000 genomes]
rs12151313	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1234251	0.85[EUR][1000 genomes]
rs13345491	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1610560	0.93[ASN][1000 genomes]
rs1667340	0.80[ASN][1000 genomes]
rs1667343	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16971873	0.80[ASN][1000 genomes]
rs16971886	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17707446	0.80[EUR][1000 genomes]
rs1879497	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962889	0.83[EUR][1000 genomes]
rs2011475	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2562587	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3745768	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3745770	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45626541	0.84[EUR][1000 genomes]
rs55792845	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55921822	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56080874	0.81[EUR][1000 genomes]
rs56208574	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56330606	0.87[EUR][1000 genomes]
rs57916401	0.82[ASN][1000 genomes]
rs703530	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs703535	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs703537	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7247589	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7252230	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7254616	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7256001	0.80[ASN][1000 genomes]
rs7256213	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7256746	0.83[EUR][1000 genomes]
rs7256876	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7257126	0.80[ASN][1000 genomes]
rs7257135	0.81[EUR][1000 genomes]
rs7259513	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7260386	0.85[EUR][1000 genomes]
rs73622783	0.82[EUR][1000 genomes]
rs8104919	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8106386	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8107192	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8108727	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110696	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs826322	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs826323	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9676450	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11673192	ZNF585A	Cis_1M	lymphoblastoid	RTeQTL
rs11673192	AC012309.5	cis	Esophagus Muscularis	GTEx
rs11673192	ZNF585B	cis	Artery Tibial	GTEx
rs11673192	AC012309.5	cis	Thyroid	GTEx
rs11673192	AC012309.5	cis	Artery Tibial	GTEx
rs11673192	AC012309.5	cis	Heart Left Ventricle	GTEx

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37570000-37573000	Weak transcription	Aorta	Aorta
2	chr19:37570400-37572800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr19:37570400-37576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr19:37570600-37572600	Weak transcription	K562	blood
5	chr19:37570600-37572800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr19:37570600-37572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:37570600-37572800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:37570600-37572800	Weak transcription	Primary B cells from cord blood	blood
9	chr19:37570600-37572800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr19:37570600-37572800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr19:37570600-37572800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr19:37570600-37572800	Weak transcription	Liver	Liver
13	chr19:37570600-37572800	Weak transcription	Brain Angular Gyrus	brain
14	chr19:37570600-37572800	Weak transcription	Brain Anterior Caudate	brain
15	chr19:37570600-37572800	Weak transcription	Brain Hippocampus Middle	brain
16	chr19:37570600-37572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:37570600-37572800	Weak transcription	Colon Smooth Muscle	Colon
18	chr19:37570600-37572800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr19:37570600-37572800	Weak transcription	Fetal Brain Male	brain
20	chr19:37570600-37572800	Weak transcription	Fetal Lung	lung
21	chr19:37570600-37572800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr19:37570600-37572800	Weak transcription	NHEK	skin
23	chr19:37570600-37573000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:37570600-37573000	Weak transcription	Left Ventricle	heart
25	chr19:37570600-37573000	Weak transcription	Lung	lung
26	chr19:37570600-37573000	Weak transcription	Pancreas	Pancrea
27	chr19:37570600-37573600	Weak transcription	Fetal Kidney	kidney
28	chr19:37570600-37574400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr19:37570600-37580000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:37570600-37581000	Weak transcription	Gastric	stomach
31	chr19:37570600-37581600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr19:37570800-37572600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr19:37570800-37572600	Weak transcription	Adipose Nuclei	Adipose
34	chr19:37570800-37572800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr19:37570800-37572800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr19:37570800-37573000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr19:37570800-37573400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr19:37570800-37579800	Weak transcription	Hela-S3	cervix
39	chr19:37571000-37572600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:37571000-37573400	ZNF genes & repeats	Fetal Brain Female	brain
41	chr19:37571000-37580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:37571000-37594800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:37571200-37572800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr19:37571200-37573600	Strong transcription	Ovary	ovary
45	chr19:37571200-37577800	Weak transcription	Right Ventricle	heart
46	chr19:37571400-37572800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr19:37571400-37572800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr19:37571400-37572800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr19:37571400-37574800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr19:37571400-37578000	ZNF genes & repeats	Dnd41	blood

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