Variant report
Variant | rs2562587 |
---|---|
Chromosome Location | chr19:37510259-37510260 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10403679 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10420554 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10424584 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10426135 | 0.82[ASN][1000 genomes] |
rs1047333 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11084871 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11667146 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11670216 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11673192 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11673344 | 0.92[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes] |
rs12151313 | 0.97[EUR][1000 genomes] |
rs1234251 | 0.85[EUR][1000 genomes] |
rs13345491 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1423047 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1610560 | 0.89[ASN][1000 genomes] |
rs1644638 | 1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1644640 | 0.83[EUR][1000 genomes] |
rs1644642 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1644643 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1644645 | 1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
rs1644711 | 1.00[JPT][hapmap] |
rs1657510 | 1.00[CHB][hapmap] |
rs1667331 | 0.81[EUR][1000 genomes] |
rs1667340 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1667343 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16971873 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16971886 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs16972020 | 1.00[CHB][hapmap] |
rs16972024 | 1.00[CHB][hapmap] |
rs16972028 | 1.00[CHB][hapmap] |
rs16972030 | 1.00[CHB][hapmap] |
rs17707446 | 0.88[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap] |
rs1879497 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1962889 | 0.84[EUR][1000 genomes] |
rs2011475 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2547055 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs3745768 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3745770 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs45626541 | 0.83[EUR][1000 genomes] |
rs472226 | 0.84[EUR][1000 genomes] |
rs474017 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs475026 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs484001 | 0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap] |
rs496872 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
rs505717 | 1.00[JPT][hapmap] |
rs510757 | 0.84[MKK][hapmap];0.85[TSI][hapmap] |
rs513406 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
rs517110 | 1.00[JPT][hapmap] |
rs519551 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs524802 | 0.81[EUR][1000 genomes] |
rs528504 | 0.82[EUR][1000 genomes] |
rs529468 | 0.81[EUR][1000 genomes] |
rs540451 | 1.00[JPT][hapmap] |
rs544543 | 1.00[JPT][hapmap] |
rs547483 | 0.92[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes] |
rs550017 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs551717 | 0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap] |
rs55792845 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55921822 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56080874 | 0.81[EUR][1000 genomes] |
rs56208574 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56330606 | 0.86[EUR][1000 genomes] |
rs565721 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs568654 | 1.00[JPT][hapmap] |
rs569371 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs573294 | 1.00[JPT][hapmap] |
rs703530 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs703535 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs703537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7247589 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7252230 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7254616 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7256001 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7256213 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7256746 | 0.92[CEU][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes] |
rs7256876 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7257126 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7257135 | 0.88[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes] |
rs7259513 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7260386 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
rs734381 | 0.82[EUR][1000 genomes] |
rs73622783 | 0.83[EUR][1000 genomes] |
rs8104919 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8106386 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8107192 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8108727 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs8110696 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs826262 | 0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap] |
rs826290 | 1.00[JPT][hapmap] |
rs826296 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
rs826303 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes] |
rs826304 | 0.92[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes] |
rs826307 | 0.82[EUR][1000 genomes] |
rs826314 | 0.83[EUR][1000 genomes] |
rs826322 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs826323 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9676450 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1064851 | chr19:36910259-37689721 | Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
2 | nsv1065698 | chr19:36916796-37690124 | Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
3 | nsv543999 | chr19:36916796-37690124 | Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
4 | nsv529817 | chr19:36930549-37654062 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
5 | nsv918028 | chr19:37020645-38014526 | Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
6 | esv3507199 | chr19:37284708-37805639 | Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
7 | esv3507200 | chr19:37284708-37805639 | ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
8 | esv3497360 | chr19:37290273-37745365 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
9 | esv3497361 | chr19:37290273-37745365 | Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
10 | nsv458568 | chr19:37325826-37747108 | Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
11 | nsv579461 | chr19:37325826-37747108 | Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
12 | nsv833818 | chr19:37427808-37602800 | Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
13 | nsv911652 | chr19:37437106-37774299 | Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
14 | nsv911653 | chr19:37482151-37556673 | ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
15 | nsv911654 | chr19:37487632-37758082 | Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
16 | esv2762037 | chr19:37503899-37510784 | Weak transcription ZNF genes & repeats Active TSS Strong transcription | n/a | n/a | inside rSNPs | n/a |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs2562587 | ZNF585B | cis | Artery Tibial | GTEx |
rs2562587 | AC012309.5 | cis | Heart Left Ventricle | GTEx |
rs2562587 | AC012309.5 | cis | Thyroid | GTEx |
rs2562587 | AC012309.5 | cis | Esophagus Muscularis | GTEx |
rs2562587 | MED29 | cis | cerebellum | SCAN |
rs2562587 | ZNF585A | cis | Liver | GTEx |
rs2562587 | HKR1 | cis | multi-tissue | Pritchard |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:37507800-37510800 | Weak transcription | Ovary | ovary |
2 | chr19:37507800-37512400 | Weak transcription | Pancreas | Pancrea |