Variant report

Variant	rs11674229
Chromosome Location	chr2:191245093-191245094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191244163..191247100-chr2:191325958..191329938,4	K562	blood:
2	chr2:191184133..191186291-chr2:191242934..191245669,2	K562	blood:
3	chr2:191242745..191245683-chr2:191540842..191543473,2	K562	blood:
4	chr2:191240106..191242301-chr2:191243932..191245503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198130	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10804034	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673921	0.82[EUR][1000 genomes]
rs11695681	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17801596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36064835	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4343493	0.82[EUR][1000 genomes]
rs4597559	0.82[EUR][1000 genomes]
rs4638823	0.85[EUR][1000 genomes]
rs4853701	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55918914	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62180963	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180964	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62180981	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62180988	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62180989	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62181001	0.85[EUR][1000 genomes]
rs62181002	0.85[EUR][1000 genomes]
rs62181014	0.85[EUR][1000 genomes]
rs62181015	0.85[EUR][1000 genomes]
rs62181017	0.82[EUR][1000 genomes]
rs6707836	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6708018	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6725814	0.83[ASN][1000 genomes]
rs6742904	0.85[EUR][1000 genomes]
rs6753226	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6756354	0.85[EUR][1000 genomes]
rs72903331	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905231	0.85[EUR][1000 genomes]
rs72905290	0.82[EUR][1000 genomes]
rs7572139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11674229	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs11674229	HIBCH	Cis_1M	lymphoblastoid	RTeQTL
rs11674229	TMEM194B	cis	Thyroid	GTEx
rs11674229	FLJ20160	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191231800-191247800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:191236400-191245400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:191237200-191246000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:191244400-191246400	Enhancers	Fetal Lung	lung
5	chr2:191244600-191245800	Enhancers	HepG2	liver
6	chr2:191244600-191246800	Enhancers	K562	blood
7	chr2:191244600-191248800	Weak transcription	Gastric	stomach
8	chr2:191244800-191246800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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