Variant report

Variant	rs6756354
Chromosome Location	chr2:191313898-191313899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191312393..191314160-chr2:191314674..191317293,2	K562	blood:
2	chr2:191302915..191305261-chr2:191313085..191315197,2	K562	blood:
3	chr2:191310036..191312812-chr2:191313427..191316228,3	MCF-7	breast:
4	chr2:191270997..191273202-chr2:191311364..191314320,2	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10804034	0.81[EUR][1000 genomes]
rs10931455	0.89[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10931459	0.89[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10931460	0.89[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10931464	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11673788	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11673921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674229	0.85[EUR][1000 genomes]
rs11675051	0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11677333	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11685221	0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11686226	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11695681	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11891641	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs13005335	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17801596	0.85[EUR][1000 genomes]
rs2159822	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34101385	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34109383	0.83[EUR][1000 genomes]
rs34703964	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34751744	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35954637	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36064835	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3934784	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4324341	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4343493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384819	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4384820	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4597559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4638823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853701	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55784091	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55788736	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55884870	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55901912	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55918914	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56094872	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56337518	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61730953	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61743479	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62180963	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62180964	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180981	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62180988	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62180989	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62181001	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181002	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181017	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181024	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62181026	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62181027	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62181031	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62181032	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62181033	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62181036	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62181053	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181057	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62182860	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62182861	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62182862	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62182863	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62182864	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62182892	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62182893	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6707836	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6708018	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6714829	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6719656	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6725814	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6727054	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6742904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753226	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6757698	0.89[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72903331	0.85[EUR][1000 genomes]
rs72905231	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905290	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907168	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72911128	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7572139	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7573621	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7574871	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7721	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6756354	TMEM194B	cis	Thyroid	GTEx
rs6756354	TMEM194B	cis	Adipose Subcutaneous	GTEx
rs6756354	HIBCH	Cis_1M	lymphoblastoid	RTeQTL
rs6756354	FLJ20160	cis	multi-tissue	Pritchard
rs6756354	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191302200-191319200	Weak transcription	Fetal Intestine Small	intestine
2	chr2:191302200-191321200	Weak transcription	Esophagus	oesophagus
3	chr2:191302400-191331000	Weak transcription	A549	lung
4	chr2:191302800-191317200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:191302800-191319400	Weak transcription	Fetal Brain Female	brain
6	chr2:191302800-191320200	Weak transcription	Fetal Thymus	thymus
7	chr2:191302800-191321200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:191303400-191321000	Weak transcription	Thymus	Thymus
9	chr2:191303400-191321200	Weak transcription	Dnd41	blood
10	chr2:191303600-191321000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:191303800-191321000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr2:191303800-191331600	Weak transcription	Brain Germinal Matrix	brain
13	chr2:191303800-191332600	Weak transcription	Fetal Intestine Large	intestine
14	chr2:191306600-191321000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:191306600-191351000	Weak transcription	Pancreas	Pancrea
16	chr2:191306800-191315400	Weak transcription	K562	blood
17	chr2:191307600-191322600	Weak transcription	Aorta	Aorta
18	chr2:191308000-191328800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:191308600-191315800	Weak transcription	Primary T cells from cord blood	blood
20	chr2:191308800-191316200	Weak transcription	Lung	lung
21	chr2:191308800-191317400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:191308800-191317800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr2:191308800-191317800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:191308800-191318200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:191308800-191319000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr2:191308800-191320000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:191308800-191327200	Weak transcription	Right Atrium	heart
28	chr2:191309200-191316200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:191309200-191322400	Weak transcription	Fetal Muscle Leg	muscle
30	chr2:191309400-191315600	Weak transcription	Primary B cells from cord blood	blood
31	chr2:191309400-191331400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr2:191310200-191323600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:191310400-191331600	Weak transcription	Stomach Mucosa	stomach
34	chr2:191311400-191324200	Weak transcription	Fetal Heart	heart
35	chr2:191311600-191316400	Weak transcription	Right Ventricle	heart
36	chr2:191311600-191321400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:191311600-191321400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr2:191311600-191331400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr2:191311800-191315600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr2:191311800-191316000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr2:191311800-191317600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr2:191311800-191324600	Weak transcription	Left Ventricle	heart
43	chr2:191311800-191331400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:191311800-191331400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr2:191311800-191331600	Weak transcription	Ovary	ovary
46	chr2:191312000-191315600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr2:191312000-191316000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr2:191312000-191316200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:191312000-191316200	Weak transcription	NHDF-Ad	bronchial
50	chr2:191312000-191332400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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