Variant report

Variant	rs62182862
Chromosome Location	chr2:191414926-191414927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191413067..191415072-chr2:191491167..191493788,2	K562	blood:
2	chr2:191402553..191405475-chr2:191414639..191416987,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10204628	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10931455	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10931459	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931460	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931464	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11673788	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11673921	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11675051	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11677333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11685221	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11686226	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11695681	0.86[EUR][1000 genomes]
rs11891641	0.88[ASN][1000 genomes]
rs13005335	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2159821	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2159822	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34101385	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34109383	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34703964	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34751744	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35954637	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36064835	0.87[EUR][1000 genomes]
rs3934784	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4324341	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4343493	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4384819	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384820	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597559	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4638823	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4853701	0.87[EUR][1000 genomes]
rs55784091	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55788736	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55884870	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55901912	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55918914	0.87[EUR][1000 genomes]
rs56094872	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56337518	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61730953	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61743479	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180964	0.85[EUR][1000 genomes]
rs62180981	0.85[EUR][1000 genomes]
rs62180988	0.85[EUR][1000 genomes]
rs62180989	0.86[EUR][1000 genomes]
rs62181001	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181002	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181014	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181015	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181017	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62181024	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181026	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181027	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181031	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62181032	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62181033	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62181035	0.88[ASN][1000 genomes]
rs62181036	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181053	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181057	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182863	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182864	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182892	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62182893	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6434404	0.95[ASN][1000 genomes]
rs6707836	0.87[EUR][1000 genomes]
rs6708018	0.87[EUR][1000 genomes]
rs6714829	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727054	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6742904	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6751217	0.88[ASN][1000 genomes]
rs6753226	0.80[EUR][1000 genomes]
rs6756354	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6757698	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72905231	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72905290	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72907168	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72911128	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7573621	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7574871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs62182862	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs62182862	FLJ20160	cis	multi-tissue	Pritchard
rs62182862	TMEM194B	cis	Adipose Subcutaneous	GTEx
rs62182862	TMEM194B	cis	Thyroid	GTEx
rs62182862	HIBCH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191403000-191416800	Weak transcription	Gastric	stomach
2	chr2:191405400-191416800	Weak transcription	Esophagus	oesophagus
3	chr2:191410800-191418200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
5	chr2:191411800-191416800	Weak transcription	Psoas Muscle	Psoas
6	chr2:191412000-191416600	Weak transcription	HepG2	liver
7	chr2:191413000-191416000	Weak transcription	Primary T cells from cord blood	blood
8	chr2:191413600-191416600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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