Variant report

Variant	rs34703964
Chromosome Location	chr2:191436316-191436317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191435113..191437081-chr2:191440439..191443139,3	MCF-7	breast:
2	chr2:191426756..191429065-chr2:191435879..191437749,2	K562	blood:
3	chr2:191433891..191435681-chr2:191435734..191438832,3	K562	blood:
4	chr2:191434026..191436627-chr2:191744647..191746708,2	K562	blood:

Variant related genes	Relation type
ENSG00000115419	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10204628	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10931455	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10931459	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10931460	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10931464	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11673788	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11673921	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11675051	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11677333	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11685221	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11686226	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11695681	0.83[EUR][1000 genomes]
rs11891641	0.81[ASN][1000 genomes]
rs13005335	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2159821	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2159822	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34101385	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34109383	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34751744	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35954637	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36064835	0.83[EUR][1000 genomes]
rs3934784	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4324341	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4343493	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4384819	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4384820	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4597559	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4638823	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4853701	0.83[EUR][1000 genomes]
rs55784091	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55788736	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55884870	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55901912	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55918914	0.84[EUR][1000 genomes]
rs56094872	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56337518	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61730953	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61743479	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62180964	0.81[EUR][1000 genomes]
rs62180981	0.81[EUR][1000 genomes]
rs62180988	0.81[EUR][1000 genomes]
rs62180989	0.82[EUR][1000 genomes]
rs62181001	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62181002	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62181014	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62181015	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62181017	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181024	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62181026	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62181027	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62181031	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62181032	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62181033	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62181035	0.81[ASN][1000 genomes]
rs62181036	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62181053	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62181057	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182860	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182861	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182862	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182863	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182864	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182892	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62182893	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6434404	0.88[ASN][1000 genomes]
rs6707836	0.84[EUR][1000 genomes]
rs6708018	0.84[EUR][1000 genomes]
rs6714829	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6719656	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6727054	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6742904	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6751217	0.81[ASN][1000 genomes]
rs6756354	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6757698	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72905231	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72905290	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72907168	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72911128	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7573621	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7574871	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7721	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34703964	HIBCH	Cis_1M	lymphoblastoid	RTeQTL
rs34703964	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs34703964	FLJ20160	cis	multi-tissue	Pritchard

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191427200-191443000	Weak transcription	Right Ventricle	heart
3	chr2:191427600-191441400	Weak transcription	Aorta	Aorta
4	chr2:191431200-191437000	Weak transcription	Stomach Mucosa	stomach
5	chr2:191433000-191436600	Weak transcription	Fetal Intestine Small	intestine
6	chr2:191433000-191440600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:191433200-191436400	Weak transcription	Brain Anterior Caudate	brain
8	chr2:191434600-191439400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:191434600-191439400	Enhancers	HMEC	breast
10	chr2:191434600-191439400	Enhancers	NHEK	skin
11	chr2:191434800-191436400	Weak transcription	Fetal Stomach	stomach
12	chr2:191434800-191438400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:191435000-191438400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:191435000-191439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:191435400-191436400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:191435400-191436400	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:191435400-191438400	Weak transcription	Esophagus	oesophagus
18	chr2:191435400-191443000	Weak transcription	Left Ventricle	heart
19	chr2:191435600-191437000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:191435600-191438000	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:191436200-191439400	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links