Variant report

Variant	rs62181057
Chromosome Location	chr2:191409371-191409372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191404829..191406532-chr2:191409105..191411323,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10204628	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10931455	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10931459	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931460	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931464	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11673788	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11673921	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11675051	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11677333	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11685221	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11686226	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11695681	0.86[EUR][1000 genomes]
rs11891641	0.88[ASN][1000 genomes]
rs13005335	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2159821	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2159822	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34101385	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34109383	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34703964	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34751744	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35954637	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36064835	0.87[EUR][1000 genomes]
rs3934784	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4324341	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4343493	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4384819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597559	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4638823	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4853701	0.87[EUR][1000 genomes]
rs55784091	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55788736	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55884870	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55901912	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55918914	0.87[EUR][1000 genomes]
rs56094872	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56337518	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61730953	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61743479	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180964	0.85[EUR][1000 genomes]
rs62180981	0.85[EUR][1000 genomes]
rs62180988	0.85[EUR][1000 genomes]
rs62180989	0.86[EUR][1000 genomes]
rs62181001	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181002	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181014	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181015	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62181017	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62181024	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181026	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181027	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181031	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62181032	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62181033	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62181035	0.88[ASN][1000 genomes]
rs62181036	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62181053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182860	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182861	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182862	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182863	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182864	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182892	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62182893	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6434404	0.95[ASN][1000 genomes]
rs6707836	0.87[EUR][1000 genomes]
rs6708018	0.87[EUR][1000 genomes]
rs6714829	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719656	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727054	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6742904	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6751217	0.88[ASN][1000 genomes]
rs6753226	0.80[EUR][1000 genomes]
rs6756354	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6757698	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72905231	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72905290	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72907168	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72911128	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7573621	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7574871	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs62181057	FLJ20160	cis	multi-tissue	Pritchard
rs62181057	HIBCH	Cis_1M	lymphoblastoid	RTeQTL
rs62181057	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs62181057	TMEM194B	cis	Adipose Subcutaneous	GTEx
rs62181057	TMEM194B	cis	Thyroid	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191402800-191409600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:191403000-191416800	Weak transcription	Gastric	stomach
3	chr2:191405400-191409800	Weak transcription	Aorta	Aorta
4	chr2:191405400-191416800	Weak transcription	Esophagus	oesophagus
5	chr2:191406600-191410000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:191407000-191410200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:191407200-191409400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:191407600-191409800	Enhancers	Osteobl	bone
9	chr2:191408200-191410000	Weak transcription	Right Atrium	heart
10	chr2:191408400-191411600	Weak transcription	Psoas Muscle	Psoas
11	chr2:191408800-191410000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:191409000-191410000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:191409000-191410200	Weak transcription	HSMM	muscle
14	chr2:191409200-191409600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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