Variant report

Variant	rs11674701
Chromosome Location	chr2:125416042-125416043
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10165603	0.81[CEU][hapmap]
rs10184472	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10195554	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10196022	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10202655	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10202736	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs10206545	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10207721	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11123056	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11675141	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11676952	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11686268	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs12466900	0.89[GIH][hapmap]
rs12470814	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12473998	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12990799	0.81[GIH][hapmap]
rs12995183	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13003103	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13008822	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13011609	0.91[ASN][1000 genomes]
rs1394141	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1394142	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1394143	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1394146	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1454133	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs1504015	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504023	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[ASN][1000 genomes]
rs1587788	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1587789	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1604806	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1902004	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs2047874	0.91[GIH][hapmap]
rs2219107	0.80[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4848249	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs4848250	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs4848251	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4848252	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4848257	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4848947	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs4848949	0.91[ASN][1000 genomes]
rs4848950	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs4848953	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4848956	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4848957	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4848959	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4848960	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6541966	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6707181	0.84[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs6707400	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs6707412	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6712020	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6720324	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6721614	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6727845	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6739364	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6743015	0.91[ASN][1000 genomes]
rs6745271	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6750530	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6751507	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6754751	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs727179	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs727180	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7560341	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7564755	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7586683	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7599608	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7599787	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7605511	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs924802	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs924803	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs936028	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs936029	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs963189	0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs963190	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs9646915	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9646916	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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