Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10205822	0.86[CEU][hapmap]
rs10931267	0.82[EUR][1000 genomes]
rs12464291	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12465733	0.86[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.85[TSI][hapmap]
rs12471570	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs12476385	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12614343	0.86[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.89[TSI][hapmap]
rs13008273	0.86[ASN][1000 genomes]
rs2370734	0.86[CEU][hapmap];0.83[CHD][hapmap];0.85[TSI][hapmap]
rs2370735	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs28558491	0.94[ASN][1000 genomes]
rs34938912	0.86[CEU][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap]
rs3845713	0.90[EUR][1000 genomes]
rs3856420	0.93[EUR][1000 genomes]
rs4093127	0.87[EUR][1000 genomes]
rs4277485	0.92[EUR][1000 genomes]
rs4667133	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4667138	0.86[CEU][hapmap]
rs6434200	0.95[ASN][1000 genomes]
rs6721015	0.86[ASN][1000 genomes]
rs71432473	0.90[ASN][1000 genomes]
rs7571809	0.86[ASN][1000 genomes]
rs7602307	0.92[EUR][1000 genomes]
rs7602852	0.90[EUR][1000 genomes]
rs9283495	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv528437	chr2:187778830-187907901	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv999207	chr2:187787121-187924667	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv536084	chr2:187787121-187924667	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv528930	chr2:187808330-187832004	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11675678	NAB1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187809400-187826800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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