Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10931267	0.87[EUR][1000 genomes]
rs11675678	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12465733	0.82[EUR][1000 genomes]
rs12469871	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12476385	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431778	0.80[EUR][1000 genomes]
rs2370734	1.00[AFR][1000 genomes]
rs28558491	0.85[ASN][1000 genomes]
rs34938912	0.80[EUR][1000 genomes]
rs35252928	0.82[EUR][1000 genomes]
rs3845713	0.85[EUR][1000 genomes]
rs3856420	0.88[EUR][1000 genomes]
rs4093127	0.92[EUR][1000 genomes]
rs4277485	0.87[EUR][1000 genomes]
rs4667133	0.94[EUR][1000 genomes]
rs6434200	0.86[ASN][1000 genomes]
rs6721015	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71432473	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7602307	0.87[EUR][1000 genomes]
rs7602852	0.85[EUR][1000 genomes]
rs9283495	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv528437	chr2:187778830-187907901	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv999207	chr2:187787121-187924667	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv536084	chr2:187787121-187924667	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv528930	chr2:187808330-187832004	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187809400-187826800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:187816600-187821200	Weak transcription	NH-A	brain
3	chr2:187817000-187821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:187817200-187821800	Weak transcription	K562	blood
5	chr2:187820200-187820600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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