Variant report
| Variant | rs11676030 |
|---|---|
| Chromosome Location | chr2:177789458-177789459 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:177766537..177769341-chr2:177788602..177791267,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10183398 | 0.81[EUR][1000 genomes] |
| rs10930769 | 1.00[ASN][1000 genomes] |
| rs11892660 | 0.82[EUR][1000 genomes] |
| rs13398923 | 0.81[EUR][1000 genomes] |
| rs1358293 | 0.81[EUR][1000 genomes] |
| rs1358295 | 0.81[EUR][1000 genomes] |
| rs16864744 | 1.00[ASN][1000 genomes] |
| rs16864766 | 1.00[ASN][1000 genomes] |
| rs17627353 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4894220 | 1.00[ASN][1000 genomes] |
| rs4894221 | 1.00[ASN][1000 genomes] |
| rs6707630 | 1.00[ASN][1000 genomes] |
| rs6715148 | 1.00[ASN][1000 genomes] |
| rs6737247 | 1.00[ASN][1000 genomes] |
| rs73033032 | 0.83[EUR][1000 genomes] |
| rs73035099 | 1.00[ASN][1000 genomes] |
| rs7562648 | 0.82[EUR][1000 genomes] |
| rs7577255 | 1.00[ASN][1000 genomes] |
| rs7603168 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875448 | chr2:177760005-177819108 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875449 | chr2:177775612-177835010 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875450 | chr2:177785155-177819108 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177788600-177789800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
