Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10167029	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10167279	0.98[ASN][1000 genomes]
rs10194635	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10865035	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11123811	0.86[CEU][hapmap]
rs1160542	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1160544	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11677053	0.90[ASN][1000 genomes]
rs11687241	0.83[CHB][hapmap]
rs11689201	0.82[CHB][hapmap]
rs12712065	0.86[CEU][hapmap]
rs12712073	0.86[ASN][1000 genomes]
rs2309837	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4851269	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6712515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722241	0.85[ASN][1000 genomes]
rs6740612	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6740838	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6754937	0.88[ASN][1000 genomes]
rs7580200	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs893245	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9653442	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:2)

Disease	PMID	Source
Rheumatoid arthritis	24782177	GWAS catalog
Rheumatoid arthritis	20453842	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11676922	VIM	trans	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100791000-100809000	Weak transcription	Right Atrium	heart
2	chr2:100799800-100809000	Weak transcription	Right Ventricle	heart
3	chr2:100800000-100810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:100800000-100814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:100801800-100813600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:100802800-100807400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr2:100803000-100807600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr2:100804800-100809000	Weak transcription	Lung	lung
9	chr2:100806200-100814200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:100806600-100807600	Weak transcription	Adipose Nuclei	Adipose
11	chr2:100806600-100809600	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:100806800-100807000	Weak transcription	Fetal Muscle Trunk	muscle

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