Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100799651..100801761-chr2:100808694..100811483,3	MCF-7	breast:
2	chr2:100793774..100796720-chr2:100799072..100801535,2	K562	blood:

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10167029	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10167279	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10185059	0.82[EUR][1000 genomes]
rs10185510	0.82[EUR][1000 genomes]
rs10194635	0.80[ASN][1000 genomes]
rs10197987	0.85[EUR][1000 genomes]
rs10496344	0.92[CEU][hapmap]
rs11123810	0.92[CEU][hapmap]
rs11123812	0.89[CEU][hapmap]
rs1160542	0.80[ASN][1000 genomes]
rs1160544	0.80[ASN][1000 genomes]
rs11676922	0.90[ASN][1000 genomes]
rs11681966	0.92[CEU][hapmap]
rs11690905	0.92[CEU][hapmap]
rs11891046	0.84[EUR][1000 genomes]
rs11902705	0.85[EUR][1000 genomes]
rs12712067	0.89[CEU][hapmap]
rs12712071	0.81[EUR][1000 genomes]
rs12712073	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12987212	0.88[CEU][hapmap]
rs13002946	0.82[ASN][1000 genomes]
rs13003982	0.89[CEU][hapmap]
rs13415583	0.89[CEU][hapmap]
rs2309837	0.80[ASN][1000 genomes]
rs4850921	0.89[CEU][hapmap]
rs4851253	0.89[CEU][hapmap]
rs4851256	0.81[EUR][1000 genomes]
rs4851257	0.80[EUR][1000 genomes]
rs4851269	0.81[ASN][1000 genomes]
rs56054309	0.85[EUR][1000 genomes]
rs6712515	0.90[ASN][1000 genomes]
rs6722241	0.82[ASN][1000 genomes]
rs6740612	0.91[ASN][1000 genomes]
rs6740838	0.91[ASN][1000 genomes]
rs6754937	0.80[ASN][1000 genomes]
rs7580200	0.90[ASN][1000 genomes]
rs7590378	0.84[EUR][1000 genomes]
rs7593261	0.84[EUR][1000 genomes]
rs893245	0.87[ASN][1000 genomes]
rs9653442	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100791000-100809000	Weak transcription	Right Atrium	heart
2	chr2:100798400-100801800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:100798600-100801400	Enhancers	Fetal Lung	lung
4	chr2:100799000-100802800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:100799800-100801200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:100799800-100809000	Weak transcription	Right Ventricle	heart
7	chr2:100800000-100810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:100800000-100814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:100800600-100801400	Enhancers	Adipose Nuclei	Adipose
10	chr2:100800600-100801600	Enhancers	Lung	lung
11	chr2:100800800-100801600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr2:100800800-100801800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:100800800-100801800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:100800800-100801800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr2:100801000-100801600	Weak transcription	Placenta	Placenta

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