Variant report

Variant	rs10197987
Chromosome Location	chr2:100790783-100790784
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100787797..100791305-chr2:100792187..100794727,3	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10167029	0.83[EUR][1000 genomes]
rs10167279	0.83[EUR][1000 genomes]
rs10185059	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10185510	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10496344	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11123809	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11123810	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11123811	0.97[ASN][1000 genomes]
rs11123812	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11123813	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11677053	0.85[EUR][1000 genomes]
rs11681227	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11681966	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690905	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11891046	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899489	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11900482	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11902705	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12712064	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12712065	0.97[ASN][1000 genomes]
rs12712067	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12712068	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12712069	0.81[ASN][1000 genomes]
rs12712071	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12712073	0.80[EUR][1000 genomes]
rs12987209	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12987212	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13003982	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13005282	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13032454	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13415465	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13415583	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1370353	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1821826	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1821827	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2009094	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2009095	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2118280	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2164712	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2309752	0.94[ASN][1000 genomes]
rs4490209	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4850921	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4851252	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4851253	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4851254	0.80[ASN][1000 genomes]
rs4851256	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851257	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56054309	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7590378	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593261	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608424	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100789800-100790800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:100790000-100793800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:100790400-100790800	Enhancers	Fetal Lung	lung
4	chr2:100790400-100790800	Active TSS	Ovary	ovary
5	chr2:100790600-100790800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:100790600-100790800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:100790600-100791000	Enhancers	Liver	Liver
8	chr2:100790600-100794400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr2:100790600-100794800	Weak transcription	Monocytes-CD14+_RO01746	blood

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