Variant report

Variant	rs7608424
Chromosome Location	chr2:100796543-100796544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100793774..100796720-chr2:100799072..100801535,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10185059	0.94[ASN][1000 genomes]
rs10185510	0.94[ASN][1000 genomes]
rs10197987	0.95[ASN][1000 genomes]
rs10496344	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11123809	0.92[ASN][1000 genomes]
rs11123810	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11123811	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11123812	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11123813	0.94[ASN][1000 genomes]
rs11681227	0.89[ASN][1000 genomes]
rs11681966	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11690905	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11694875	0.83[EUR][1000 genomes]
rs11885529	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11891046	0.95[ASN][1000 genomes]
rs11899489	0.94[ASN][1000 genomes]
rs11900482	0.92[ASN][1000 genomes]
rs11902705	0.98[ASN][1000 genomes]
rs12712064	0.90[ASN][1000 genomes]
rs12712065	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12712067	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12712068	0.94[ASN][1000 genomes]
rs12712071	0.94[ASN][1000 genomes]
rs12987209	0.92[ASN][1000 genomes]
rs12987212	0.92[ASN][1000 genomes]
rs13003982	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13005282	0.93[ASN][1000 genomes]
rs13032454	0.90[ASN][1000 genomes]
rs13415465	0.94[ASN][1000 genomes]
rs13415583	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1370353	0.94[ASN][1000 genomes]
rs1561230	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1821826	0.94[ASN][1000 genomes]
rs1821827	0.94[ASN][1000 genomes]
rs2009094	0.94[ASN][1000 genomes]
rs2009095	0.94[ASN][1000 genomes]
rs2309752	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4490209	0.93[ASN][1000 genomes]
rs4850921	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4851252	0.90[ASN][1000 genomes]
rs4851253	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4851256	0.95[ASN][1000 genomes]
rs4851257	0.94[ASN][1000 genomes]
rs56054309	0.98[ASN][1000 genomes]
rs7565967	0.84[EUR][1000 genomes]
rs7583067	0.81[ASN][1000 genomes]
rs7590378	0.95[ASN][1000 genomes]
rs7593261	0.95[ASN][1000 genomes]
rs7596385	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100791000-100809000	Weak transcription	Right Atrium	heart
2	chr2:100794600-100797200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:100795000-100799000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:100795200-100798600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:100795200-100799000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:100796000-100797000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:100796200-100796800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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