Variant report

Variant	rs13002946
Chromosome Location	chr2:100801959-100801960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100801656..100803685-chr2:100807811..100809953,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10496345	0.85[ASN][1000 genomes]
rs11123817	0.84[ASN][1000 genomes]
rs1122231	0.84[ASN][1000 genomes]
rs1160543	0.84[ASN][1000 genomes]
rs1160545	0.84[ASN][1000 genomes]
rs11677053	0.82[ASN][1000 genomes]
rs11678979	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11684761	0.84[ASN][1000 genomes]
rs11686372	0.84[ASN][1000 genomes]
rs11687241	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs11689199	0.84[ASN][1000 genomes]
rs11689201	0.81[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs11690335	0.84[ASN][1000 genomes]
rs11691409	0.84[ASN][1000 genomes]
rs11691869	0.88[ASN][1000 genomes]
rs11693324	0.84[ASN][1000 genomes]
rs11695383	0.84[ASN][1000 genomes]
rs12619178	0.84[ASN][1000 genomes]
rs12987662	0.84[ASN][1000 genomes]
rs12990462	0.84[ASN][1000 genomes]
rs12991254	0.85[ASN][1000 genomes]
rs12992090	0.84[ASN][1000 genomes]
rs13013169	0.88[ASN][1000 genomes]
rs13017207	0.82[ASN][1000 genomes]
rs13018640	0.84[ASN][1000 genomes]
rs13026283	0.82[ASN][1000 genomes]
rs13034176	0.84[ASN][1000 genomes]
rs1465800	0.84[ASN][1000 genomes]
rs1465801	0.84[ASN][1000 genomes]
rs2309757	0.88[ASN][1000 genomes]
rs2309838	0.84[ASN][1000 genomes]
rs2871344	0.84[ASN][1000 genomes]
rs4303732	0.84[ASN][1000 genomes]
rs4583487	0.84[ASN][1000 genomes]
rs4851264	0.89[ASN][1000 genomes]
rs4851266	0.85[ASN][1000 genomes]
rs4851267	0.84[ASN][1000 genomes]
rs4851268	0.84[ASN][1000 genomes]
rs4851270	0.84[ASN][1000 genomes]
rs4851271	0.84[ASN][1000 genomes]
rs6709656	0.88[ASN][1000 genomes]
rs6722241	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6722661	0.88[ASN][1000 genomes]
rs6750097	0.84[ASN][1000 genomes]
rs6750505	0.87[ASN][1000 genomes]
rs7566527	0.89[ASN][1000 genomes]
rs999052	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100791000-100809000	Weak transcription	Right Atrium	heart
2	chr2:100799000-100802800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:100799800-100809000	Weak transcription	Right Ventricle	heart
4	chr2:100800000-100810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:100800000-100814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:100801400-100802000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:100801400-100805800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:100801600-100803800	Weak transcription	Lung	lung
9	chr2:100801800-100803000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:100801800-100813600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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