Variant report

Variant	rs7566527
Chromosome Location	chr2:100811970-100811971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10194635	0.81[ASN][1000 genomes]
rs10496345	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10496346	0.80[EUR][1000 genomes]
rs10865035	0.84[ASN][1000 genomes]
rs11123817	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11123818	0.80[EUR][1000 genomes]
rs1122231	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160542	0.81[ASN][1000 genomes]
rs1160543	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160544	0.81[ASN][1000 genomes]
rs1160545	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11678979	0.91[ASN][1000 genomes]
rs11684761	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11685491	0.87[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs11686372	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11687241	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11689199	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11689201	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11690335	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11691409	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11691869	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11693324	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11695383	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11695996	0.87[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs12053126	0.80[EUR][1000 genomes]
rs12614880	0.81[EUR][1000 genomes]
rs12615145	0.80[EUR][1000 genomes]
rs12619178	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12712073	0.87[ASN][1000 genomes]
rs12987662	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12990462	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12991254	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12992090	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12994592	0.87[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs13002946	0.89[ASN][1000 genomes]
rs13010010	0.80[EUR][1000 genomes]
rs13013169	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13017207	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13018640	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13026143	0.80[EUR][1000 genomes]
rs13026283	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13034176	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1465800	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1465801	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2309757	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2309812	0.80[EUR][1000 genomes]
rs2309837	0.81[ASN][1000 genomes]
rs2309838	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2871344	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4303732	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4583487	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4851264	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851266	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4851267	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4851268	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4851269	0.81[ASN][1000 genomes]
rs4851270	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4851271	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6709656	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6722241	0.87[ASN][1000 genomes]
rs6722661	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6750097	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6750505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6754937	0.81[ASN][1000 genomes]
rs893246	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9653442	0.81[ASN][1000 genomes]
rs999052	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7566527	ADRA2B	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100800000-100814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:100801800-100813600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:100806200-100814200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:100807400-100812000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:100809400-100813000	Enhancers	Fetal Intestine Large	intestine
6	chr2:100809600-100815600	Enhancers	Fetal Lung	lung
7	chr2:100809800-100812400	Enhancers	Fetal Intestine Small	intestine
8	chr2:100809800-100812600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:100809800-100813400	Weak transcription	Fetal Heart	heart
10	chr2:100809800-100814200	Enhancers	Adipose Nuclei	Adipose
11	chr2:100810000-100812000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr2:100810000-100812200	Weak transcription	Aorta	Aorta
13	chr2:100810000-100812400	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:100810000-100813600	Weak transcription	NHDF-Ad	bronchial
15	chr2:100810200-100812800	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:100810200-100813400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:100810200-100813600	Weak transcription	HSMMtube	muscle
18	chr2:100810200-100814000	Weak transcription	NH-A	brain
19	chr2:100810200-100814400	Weak transcription	K562	blood
20	chr2:100810600-100812200	Weak transcription	Right Atrium	heart
21	chr2:100810600-100812200	Weak transcription	Right Ventricle	heart
22	chr2:100810600-100812400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:100810600-100812400	Weak transcription	Left Ventricle	heart
24	chr2:100810600-100814000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:100810600-100814000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:100810600-100814200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:100810600-100814200	Weak transcription	Psoas Muscle	Psoas
28	chr2:100810800-100812400	Weak transcription	Placenta	Placenta
29	chr2:100810800-100812800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:100810800-100813600	Weak transcription	HUVEC	blood vessel
31	chr2:100810800-100814200	Weak transcription	Stomach Mucosa	stomach
32	chr2:100811400-100812000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:100811400-100812800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr2:100811600-100814200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:100811800-100816600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links