Variant report

Variant	rs11677213
Chromosome Location	chr2:213296058-213296059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11688231	0.84[EUR][1000 genomes]
rs1394791	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1505367	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2135155	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34990972	0.83[EUR][1000 genomes]
rs35966747	0.83[EUR][1000 genomes]
rs35993802	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62186274	0.82[EUR][1000 genomes]
rs7570330	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213290800-213297000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213294600-213296200	Weak transcription	Fetal Heart	heart
3	chr2:213294600-213298600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:213295600-213296600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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